BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0565900 Os04g0565900|AK109094
(418 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0565900 Helix-loop-helix DNA-binding domain containing... 871 0.0
Os02g0671300 Helix-loop-helix DNA-binding domain containing... 213 2e-55
Os07g0471900 Helix-loop-helix DNA-binding domain containing... 164 1e-40
Os12g0180833 Similar to ER33 protein 141 9e-34
Os01g0784900 Basic helix-loop-helix dimerisation region bHL... 110 2e-24
Os04g0631600 Basic helix-loop-helix dimerisation region bHL... 104 9e-23
Os01g0105700 Helix-loop-helix DNA-binding domain containing... 102 6e-22
Os05g0228400 Helix-loop-helix DNA-binding domain containing... 100 3e-21
Os08g0179400 Helix-loop-helix DNA-binding domain containing... 97 3e-20
Os05g0501200 Basic helix-loop-helix dimerisation region bHL... 97 3e-20
Os04g0493100 Basic helix-loop-helix dimerisation region bHL... 94 2e-19
Os03g0759700 Similar to ER33 protein (Fragment) 92 6e-19
Os01g0230200 Helix-loop-helix DNA-binding domain containing... 88 1e-17
AK107340 84 2e-16
Os02g0276900 Helix-loop-helix DNA-binding domain containing... 80 2e-15
Os03g0279500 Basic helix-loop-helix dimerisation region bHL... 70 2e-12
>Os04g0565900 Helix-loop-helix DNA-binding domain containing protein
Length = 418
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MHGCALHPAAYRRIFHNPRSTRSHGLVAAASPPLHQPAAACGETHRIIQMHALFAVARDT 60
MHGCALHPAAYRRIFHNPRSTRSHGLVAAASPPLHQPAAACGETHRIIQMHALFAVARDT
Sbjct: 1 MHGCALHPAAYRRIFHNPRSTRSHGLVAAASPPLHQPAAACGETHRIIQMHALFAVARDT 60
Query: 61 AFSSSPAADEHLPNEHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEV 120
AFSSSPAADEHLPNEHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEV
Sbjct: 61 AFSSSPAADEHLPNEHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEV 120
Query: 121 FEGVPVACDYLKGMDSDGMAASAVAAYSLDNNGQHASVSSIEHGIASSPLLAYQLGKNSA 180
FEGVPVACDYLKGMDSDGMAASAVAAYSLDNNGQHASVSSIEHGIASSPLLAYQLGKNSA
Sbjct: 121 FEGVPVACDYLKGMDSDGMAASAVAAYSLDNNGQHASVSSIEHGIASSPLLAYQLGKNSA 180
Query: 181 VVQRSIQQQEVGSPMAAFLQQLIPTSVLDQSGIGFGGVCLDGSALEASFCMRTSPDVSSF 240
VVQRSIQQQEVGSPMAAFLQQLIPTSVLDQSGIGFGGVCLDGSALEASFCMRTSPDVSSF
Sbjct: 181 VVQRSIQQQEVGSPMAAFLQQLIPTSVLDQSGIGFGGVCLDGSALEASFCMRTSPDVSSF 240
Query: 241 SGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEVRGGGKAKKFKSETSHST 300
SGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEVRGGGKAKKFKSETSHST
Sbjct: 241 SGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEVRGGGKAKKFKSETSHST 300
Query: 301 SSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNS 360
SSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNS
Sbjct: 301 SSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNS 360
Query: 361 TNKGHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR 418
TNKGHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR
Sbjct: 361 TNKGHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR 418
>Os02g0671300 Helix-loop-helix DNA-binding domain containing protein
Length = 497
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 164/405 (40%), Positives = 212/405 (52%), Gaps = 74/405 (18%)
Query: 75 EHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEVFEGVPVACDYLKGM 134
EH GH W+ LS G +RE+ + LL + + PE+FE VP + Y +
Sbjct: 106 EHAHGHGWSHGELSNSTTGGG----YRENFLDLLASKN---VTPEMFEEVPASEHY--NV 156
Query: 135 DSDGMAASAVAAYSLDNNGQHASVSSIEHGIASSPLL----------------------- 171
G + A S D++ + + VS I++ IA SPL
Sbjct: 157 APAGTTLTTTAR-SFDHHAR-SDVSPIKYEIAGSPLYLGGTNTVLQVQDMTMMSSTPACY 214
Query: 172 -------AYQLGKNSAVVQRSIQQQEVG-SPMAAFLQQL--------IPTSVLDQSGIGF 215
+QL K + + +Q E+ SPMA+FLQQ+ + S LD SG+G
Sbjct: 215 GEHHHHHHHQLTKEGSCNHQQQEQHELAISPMASFLQQISSGSASVGVHNSSLDYSGLGD 274
Query: 216 GG---VCLDGSALEAS-FCMRTSPDVSSFSGH----RSATAEELM-----STDTREQEIT 262
C DG +EAS F MR+ PD+ SF+G+ S + + M S R+++ T
Sbjct: 275 QPDKICCQDGREMEASPFGMRSLPDLGSFAGYTPAIESTSVQPYMRCANSSDSNRQEQET 334
Query: 263 RLARSCSSSG----SDRNKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITA 318
ARS SS +DR K+K SE R KK K E S + S PK PKVKLGEKITA
Sbjct: 335 VPARSSSSGSGAAATDRKKRK-SEERQESTVKKSKQEASKA-SPPKQPVPKVKLGEKITA 392
Query: 319 LQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNS-TNK--GHIHWGGEGKRK 375
LQQIVSPFGKTDTASVL ETI YIKFLHEQ+QL S+PY +S +NK + WG + +
Sbjct: 393 LQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQAEAS 452
Query: 376 AG--LEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR 418
G +EHDLR RGLCLVPVSWT + Y D + W PAYR YR
Sbjct: 453 KGETMEHDLRNRGLCLVPVSWTPEVYRDGNAMDYWTPAYRGCLYR 497
>Os07g0471900 Helix-loop-helix DNA-binding domain containing protein
Length = 436
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/133 (63%), Positives = 96/133 (72%), Gaps = 1/133 (0%)
Query: 287 GKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLH 346
G KK K E + TSS K Q PKVKLG+KITALQQIVSPFGKTDTASVL E I YIK+LH
Sbjct: 304 GSTKKSKHEATSPTSSLKSQVPKVKLGDKITALQQIVSPFGKTDTASVLYEAINYIKWLH 363
Query: 347 EQIQLFSQPYMTNSTNKGHIHWGG-EGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILP 405
EQ+QL S PYM +S++K + WGG + K KA E DLR RGLCLVPVS T Q Y D+ P
Sbjct: 364 EQVQLLSDPYMKSSSSKDYNAWGGLDRKEKADAEVDLRSRGLCLVPVSCTPQVYRDNNGP 423
Query: 406 ECWAPAYRNYFYR 418
+ W P YR+ YR
Sbjct: 424 DYWTPPYRSCLYR 436
>Os12g0180833 Similar to ER33 protein
Length = 132
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 76/107 (71%), Positives = 79/107 (73%), Gaps = 23/107 (21%)
Query: 240 FSGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEVRGGGKAKKFKSETSHS 299
F+GHRSATAEELMSTDTREQEIT LARSCSSSGSD NKKK
Sbjct: 22 FNGHRSATAEELMSTDTREQEITWLARSCSSSGSDPNKKK-------------------- 61
Query: 300 TSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLH 346
+HQSPKV LGEKI ALQQI+SPFGKTDTASVLLETITYIKFLH
Sbjct: 62 ---SEHQSPKVNLGEKIMALQQIMSPFGKTDTASVLLETITYIKFLH 105
>Os01g0784900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 392
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 262 TRLARSCSSSG----SDRNKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKIT 317
T LA+S S S S +K +S+ K + + + P + K KLG++IT
Sbjct: 236 TLLAKSNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPL----PTFKVRKEKLGDRIT 291
Query: 318 ALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIHWGGEGKRKAG 377
ALQQ+VSPFGKTDTASVL E I YIKFLHEQ+ S PY+ N H G K
Sbjct: 292 ALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTKDA 351
Query: 378 LE--HDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYF 416
+ DLR RGLCLVPV+ T +++ PE W P + F
Sbjct: 352 EQPKPDLRSRGLCLVPVASTYTVASETV-PEFWHPTFGGTF 391
>Os04g0631600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 437
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 303 PKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTN 362
P + K KLG++ITALQQ+VSPFGKTDTASVL ETI YIKFLH+Q+ S PY+ N +
Sbjct: 324 PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHETIEYIKFLHDQVGALSAPYLKNGAH 383
Query: 363 K-GHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYF 416
+ H+ K K G E L+GRGLCLVP+S ++ + E W P N+
Sbjct: 384 QVPHLKNSSPDKSKHG-EISLKGRGLCLVPIS-STFAVASEVPVELWTPFGANFI 436
>Os01g0105700 Helix-loop-helix DNA-binding domain containing protein
Length = 388
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 8/116 (6%)
Query: 289 AKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQ 348
+KK + E+ S+ P + K KLG++I ALQQ+VSPFGKTDTASVL+E I YIKFL +Q
Sbjct: 256 SKKPRLESHSSSMLPSFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQDQ 315
Query: 349 IQLFSQPYMTNSTNKGHIHWGGEGKRKAGLEH--------DLRGRGLCLVPVSWTS 396
++ S PY+ +S N + +++ G + DLR RGLCLVP+S TS
Sbjct: 316 VETLSGPYLRSSKNSKKLACRAAQQQRKGTSNGGDAAAKLDLRSRGLCLVPLSCTS 371
>Os05g0228400 Helix-loop-helix DNA-binding domain containing protein
Length = 268
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 84/169 (49%), Gaps = 35/169 (20%)
Query: 276 NKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVL 335
N + + G KK + + S S S + K +LG++ITAL QIVSPFGKTDTASVL
Sbjct: 95 NSSECNSTATGSALKKARVQASSSAQS-TLKVRKERLGDRITALHQIVSPFGKTDTASVL 153
Query: 336 LETITYIKFLHEQIQLFSQPYMTNSTNKGHIHWGGEGKRKAGL----------------- 378
ETI YI+FL QI+ S PYM ++ G + G G+R GL
Sbjct: 154 QETIGYIRFLLSQIEALSYPYMGDANGTGPMQNGPVGERNPGLFPEYPGQLLNHNGNTGA 213
Query: 379 ----------------EHDLRGRGLCLVPVSWTSQEYCDSILPECWAPA 411
+ DLR RGLCLVPVS TS D+ + WAPA
Sbjct: 214 QQPAAQPEQQGANDDGKKDLRSRGLCLVPVSCTSHFGGDNA-ADYWAPA 261
>Os08g0179400 Helix-loop-helix DNA-binding domain containing protein
Length = 467
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 70/111 (63%), Gaps = 10/111 (9%)
Query: 309 KVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIH- 367
K KLG+++TALQQ+VSPFGKTDTASVL ETI YIKFLH+Q+ S PY+ N H+
Sbjct: 352 KEKLGDRVTALQQLVSPFGKTDTASVLHETIEYIKFLHDQVGALSAPYLKNRQQVPHLKN 411
Query: 368 --------WGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAP 410
GG G+ A + DL GRGLCLVP+S T ++ + + W P
Sbjct: 412 STGVDNDGGGGGGEATAASKRDLTGRGLCLVPISSTFAVASETPV-DFWTP 461
>Os05g0501200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 323
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 72/134 (53%), Gaps = 4/134 (2%)
Query: 286 GGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFL 345
G A K + P + K KLG++ITALQQ+VSPFGKTDTASVL E I YIKFL
Sbjct: 190 GSPAAAKKPRIEAPSPMPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFL 249
Query: 346 HEQIQLFSQPYMTNSTNKGHIHWGGEGKRKA---GLEHDLRGRGLCLVPVSWTSQEYCDS 402
H+Q+ S PY+ H G K G + DLR RGLCLVPV+ T ++
Sbjct: 250 HDQVASLSSPYLRCGRPVQLQHQQGSHKVNGNCEGKQLDLRSRGLCLVPVASTYTVASET 309
Query: 403 ILPECWAPAYRNYF 416
E W P + F
Sbjct: 310 AT-EFWHPTFGGTF 322
>Os04g0493100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 156
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 66/110 (60%), Gaps = 10/110 (9%)
Query: 302 SPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNST 361
SPK + K K+GE++ ALQQ+VSPFGKTDTASVL E YIKFLH+Q+++ S PYM
Sbjct: 51 SPKEK--KDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYMRAPP 108
Query: 362 NKGHIHWGGEGKRKAGLEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPA 411
G + + LR RGLCLVPV T Q S + WAPA
Sbjct: 109 VPGAAPEDPD-------HYSLRNRGLCLVPVDQTLQ-LTQSNGADLWAPA 150
>Os03g0759700 Similar to ER33 protein (Fragment)
Length = 317
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 9/137 (6%)
Query: 265 ARSCSSSGSDRNKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVS 324
A + SSS S KKK S G +K + + +T++ + + + +LGE+I ALQQ+VS
Sbjct: 121 ATAISSSKSPAFKKKGSR---GCDQRKATAPAAATTTNKRPRVRRERLGERIIALQQLVS 177
Query: 325 PFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIHW------GGEGKRKAGL 378
PFGK+DTASVL E + YI+FLH+Q+Q+ S PY+ + E + A
Sbjct: 178 PFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALR 237
Query: 379 EHDLRGRGLCLVPVSWT 395
DLR RGLCLVP+S T
Sbjct: 238 PSDLRSRGLCLVPISCT 254
>Os01g0230200 Helix-loop-helix DNA-binding domain containing protein
Length = 406
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 76/148 (51%), Gaps = 26/148 (17%)
Query: 271 SGSDRNKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTD 330
+G N + + G KK + + S S S + K +LG++ITAL QIVSPFGKTD
Sbjct: 222 AGQSDNSSECNSTETGSALKKARVQASSSAQS-TLKVRKERLGDRITALHQIVSPFGKTD 280
Query: 331 TASVLLETITYIKFLHEQIQLFSQPYMTN--STNKGHIHWG---GE-------------- 371
TASVL ETI YI+FL QI+ S PY+ S N G GE
Sbjct: 281 TASVLQETIGYIRFLLGQIEALSYPYLGQCCSANPMQQQTGIMAGERSTDGLFPEFPAGQ 340
Query: 372 ------GKRKAGLEHDLRGRGLCLVPVS 393
K++A + DLR RGLCLVPVS
Sbjct: 341 DAEKDGKKQQAKKDDDLRSRGLCLVPVS 368
>AK107340
Length = 372
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 276 NKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVL 335
N + + G KK + + S S S + K +LG++ITAL QIVSPFGKTDTASVL
Sbjct: 242 NSSECNSTATGSALKKARVQASSSAQS-TLKVRKERLGDRITALHQIVSPFGKTDTASVL 300
Query: 336 LETITYIKFLHEQIQLFSQPYMTNSTNKGHIHWGGEGKRKAGLEHDLRGRGL 387
ETI YI+FL QI+ S PYM ++ G + G G+R GL + G+ L
Sbjct: 301 QETIGYIRFLLSQIEALSYPYMGDANGTGPMQNGPVGERNPGLFPEYPGQLL 352
>Os02g0276900 Helix-loop-helix DNA-binding domain containing protein
Length = 412
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 72/158 (45%), Gaps = 48/158 (30%)
Query: 309 KVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNST------- 361
K KLG++ITAL Q+VSPFGKTDTASVLLE I YI+FLH QI+ S PY+ N
Sbjct: 255 KEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLGNGGSSSNGGG 314
Query: 362 -----------------------------NKGHIHWGGEGKRKAGLEHD----------L 382
+ G + K++ + D L
Sbjct: 315 GGGGGSNSKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDL 374
Query: 383 RGRGLCLVPVSWTSQEYCDSILPECWA--PAYRNYFYR 418
R RGLCLVPVS T D+ + WA PA+ F R
Sbjct: 375 RSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR 412
>Os03g0279500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 415
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 29/128 (22%)
Query: 291 KFKSETSHSTSSPKHQSPKVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQ 350
K +++T+ +T + Q KLG++ITALQQ+VSP+GKTDTASVL E I+ LH+QIQ
Sbjct: 264 KPRNQTTKATCKKRSQ----KLGDRITALQQLVSPYGKTDTASVLHEAAACIRQLHQQIQ 319
Query: 351 LFSQPY-------------------------MTNSTNKGHIHWGGEGKRKAGLEHDLRGR 385
+ + PY M+ T + W + G +LR R
Sbjct: 320 ILTAPYPGTSSSSASSQQQVVFSVLESCSHVMSFFTAIATVLWLQDAGGGGGTATELRRR 379
Query: 386 GLCLVPVS 393
GLC+ +S
Sbjct: 380 GLCVAALS 387
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,337,822
Number of extensions: 672689
Number of successful extensions: 2350
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 2336
Number of HSP's successfully gapped: 16
Length of query: 418
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 315
Effective length of database: 11,657,759
Effective search space: 3672194085
Effective search space used: 3672194085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)