Os01g0784900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os01g0784900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.94 | 0.433 | 7.26 | 0.94 | 0.728 | -1.48 | -1.38 | 1.78 | 0.284 | 12.9 | 25.05 | 12 | -- | -- |
| 85.54 | 0.434 | 7.26 | 0.786 | 0.726 | -1.32 | -1.19 | -- | 0.327 | 12.7 | 22.32 | 18 | -- | -- |
| 90.99 | 0.448 | 7.28 | 0.609 | 0.738 | -1.34 | -- | -0.851 | 0.272 | 12.8 | 23.16 | 5 | -- | -- |
| 91.38 | 0.445 | 7.26 | 0.738 | 0.756 | -1.39 | -- | -- | 0.315 | 12.8 | 23.22 | 2 | -- | -- |
| 97.03 | 0.459 | 7.25 | 1.02 | -- | -1.45 | -- | 0.908 | 0.379 | -- | 10.53 | 788 | -- | -- |
| 115.35 | 0.503 | 7.31 | 0.539 | 0.338 | -- | -1.33 | -- | 0.12 | 11.4 | -- | -- | -- | -- |
| 121.93 | 0.517 | 7.31 | 0.48 | 0.376 | -- | -- | -- | 0.111 | 9.88 | -- | -- | -- | -- |
| 97.7 | 0.46 | 7.27 | 0.849 | -- | -1.44 | -- | -- | 0.333 | -- | 12.57 | 776 | -- | -- |
| 103.41 | 0.476 | 7.31 | -- | 0.653 | -1.28 | -- | -- | 0.101 | 12.6 | 25.7 | 5 | -- | -- |
| 130.39 | 0.534 | 7.32 | 0.476 | -- | -- | -- | -- | 0.111 | -- | -- | -- | -- | -- |
| 128 | 0.529 | 7.32 | -- | 0.374 | -- | -- | -- | 0.0579 | 9.78 | -- | -- | -- | -- |
| 114.59 | 0.499 | 7.3 | -- | -- | -1.12 | -- | -- | 0.197 | -- | 12.58 | 706 | -- | -- |
| 136.37 | 0.545 | 7.33 | -- | -- | -- | -- | -- | 0.0586 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.05 | temperature | 15.0 | 270 | > th | dose dependent | sin | 4 | NA |
| 13 | 78.17 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 17 | 78.56 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 20 | 78.68 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 26 | 78.94 | temperature | 30.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 74 | 80.63 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 127 | 81.51 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 135 | 81.60 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 7 |
| 171 | 82.12 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 172 | 82.13 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 207 | 82.56 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 226 | 82.75 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 231 | 82.78 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 392 | 84.04 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 416 | 84.19 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 418 | 84.21 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 426 | 84.28 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 500 | 84.71 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 513 | 84.75 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 521 | 84.79 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 526 | 84.82 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 528 | 84.83 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 539 | 84.85 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 546 | 84.89 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 563 | 84.95 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 604 | 85.03 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 623 | 85.08 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 642 | 85.16 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 659 | 85.19 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 664 | 85.20 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 665 | 85.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 666 | 85.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 667 | 85.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 668 | 85.22 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 671 | 85.22 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 672 | 85.23 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 706 | 85.32 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 748 | 85.49 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 753 | 85.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 769 | 85.59 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 7 |
| 773 | 85.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 784 | 85.65 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 891 | 85.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 893 | 85.97 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 905 | 85.99 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 942 | 86.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 943 | 86.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 945 | 86.07 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 15 | 2 |