BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0784900 Os01g0784900|Os01g0784900
(392 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0784900 Basic helix-loop-helix dimerisation region bHL... 749 0.0
Os05g0501200 Basic helix-loop-helix dimerisation region bHL... 220 2e-57
Os04g0631600 Basic helix-loop-helix dimerisation region bHL... 173 2e-43
Os08g0179400 Helix-loop-helix DNA-binding domain containing... 147 1e-35
Os01g0105700 Helix-loop-helix DNA-binding domain containing... 136 2e-32
Os07g0471900 Helix-loop-helix DNA-binding domain containing... 121 8e-28
Os05g0228400 Helix-loop-helix DNA-binding domain containing... 114 1e-25
Os02g0276900 Helix-loop-helix DNA-binding domain containing... 114 1e-25
Os03g0759700 Similar to ER33 protein (Fragment) 112 4e-25
Os04g0565900 Helix-loop-helix DNA-binding domain containing... 110 2e-24
Os01g0230200 Helix-loop-helix DNA-binding domain containing... 108 6e-24
Os02g0671300 Helix-loop-helix DNA-binding domain containing... 107 1e-23
Os04g0493100 Basic helix-loop-helix dimerisation region bHL... 100 2e-21
AK107340 92 8e-19
Os03g0279500 Basic helix-loop-helix dimerisation region bHL... 79 8e-15
AK064057 67 3e-11
>Os01g0784900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 392
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/392 (94%), Positives = 372/392 (94%)
Query: 1 MADEWWSASQRSHGTSACSAAPSPLTADRVSCGWTSPXXXXXXESTSSITFQDPSRSSAA 60
MADEWWSASQRSHGTSACSAAPSPLTADRVSCGWTSP ESTSSITFQDPSRSSAA
Sbjct: 1 MADEWWSASQRSHGTSACSAAPSPLTADRVSCGWTSPAAAAAAESTSSITFQDPSRSSAA 60
Query: 61 HHQPLSDAASSLGDPHMVDWTQAFLSGRSDASFQAVLQDDMAASTRPFRAQPTAADEAVM 120
HHQPLSDAASSLGDPHMVDWTQAFLSGRSDASFQAVLQDDMAASTRPFRAQPTAADEAVM
Sbjct: 61 HHQPLSDAASSLGDPHMVDWTQAFLSGRSDASFQAVLQDDMAASTRPFRAQPTAADEAVM 120
Query: 121 TNPFRDMGVGQGLLLDQASAPLHGLSFDAGEPAVAPATHSITTSFGDYQHSASYDAAAAV 180
TNPFRDMGVGQGLLLDQASAPLHGLSFDAGEPAVAPATHSITTSFGDYQHSASYDAAAAV
Sbjct: 121 TNPFRDMGVGQGLLLDQASAPLHGLSFDAGEPAVAPATHSITTSFGDYQHSASYDAAAAV 180
Query: 181 MQFSQTPRAPSLPAAAQMQFLSGSYQLPFGGAXXXXXXXXXXXXXXKPSCSSNANTLLAK 240
MQFSQTPRAPSLPAAAQMQFLSGSYQLPFGGA KPSCSSNANTLLAK
Sbjct: 181 MQFSQTPRAPSLPAAAQMQFLSGSYQLPFGGAPPLPSQLLLQAMQPKPSCSSNANTLLAK 240
Query: 241 SNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPLPTFKVRKEKLGDRITALQQLVSPF 300
SNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPLPTFKVRKEKLGDRITALQQLVSPF
Sbjct: 241 SNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPLPTFKVRKEKLGDRITALQQLVSPF 300
Query: 301 GKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTKDAEQPKPDLRS 360
GKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTKDAEQPKPDLRS
Sbjct: 301 GKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTKDAEQPKPDLRS 360
Query: 361 RGLCLVPVASTYTVASETVPEFWHPTFGGTFR 392
RGLCLVPVASTYTVASETVPEFWHPTFGGTFR
Sbjct: 361 RGLCLVPVASTYTVASETVPEFWHPTFGGTFR 392
>Os05g0501200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 323
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/138 (78%), Positives = 118/138 (85%), Gaps = 1/138 (0%)
Query: 256 KSVSDSPAAAKRPRIEVPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEY 315
+S SPAAAK+PRIE PSP+PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEY
Sbjct: 186 RSSPGSPAAAKKPRIEAPSPMPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEY 245
Query: 316 IKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTK-DAEQPKPDLRSRGLCLVPVASTYTV 374
IKFLH+QVASLSSPYL+ G P+Q Q+GS + E + DLRSRGLCLVPVASTYTV
Sbjct: 246 IKFLHDQVASLSSPYLRCGRPVQLQHQQGSHKVNGNCEGKQLDLRSRGLCLVPVASTYTV 305
Query: 375 ASETVPEFWHPTFGGTFR 392
ASET EFWHPTFGGTFR
Sbjct: 306 ASETATEFWHPTFGGTFR 323
>Os04g0631600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 437
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/135 (62%), Positives = 101/135 (74%), Gaps = 5/135 (3%)
Query: 258 VSDSPAAAKRPRIEVPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIK 317
++ A K+PR+E PSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHE IEYIK
Sbjct: 305 ITKKETAFKKPRLETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHETIEYIK 364
Query: 318 FLHEQVASLSSPYLKNG-NPLQHFQQKGSESTKDAEQPKPDLRSRGLCLVPVASTYTVAS 376
FLH+QV +LS+PYLKNG + + H + + +K E L+ RGLCLVP++ST+ VAS
Sbjct: 365 FLHDQVGALSAPYLKNGAHQVPHLKNSSPDKSKHGEI---SLKGRGLCLVPISSTFAVAS 421
Query: 377 ETVPEFWHPTFGGTF 391
E E W P FG F
Sbjct: 422 EVPVELWTP-FGANF 435
>Os08g0179400 Helix-loop-helix DNA-binding domain containing protein
Length = 467
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 94/159 (59%), Gaps = 33/159 (20%)
Query: 266 KRPRIEVPSPLPT-------------------------FKVRKEKLGDRITALQQLVSPF 300
K+ R PSPLPT F VRKEKLGDR+TALQQLVSPF
Sbjct: 310 KKSRTGTPSPLPTTFKACVYIYIIFNLSQMVIDFLPIKFHVRKEKLGDRVTALQQLVSPF 369
Query: 301 GKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQ-------KGSESTKDAEQ 353
GKTDTASVLHE IEYIKFLH+QV +LS+PYLKN + H + G +
Sbjct: 370 GKTDTASVLHETIEYIKFLHDQVGALSAPYLKNRQQVPHLKNSTGVDNDGGGGGGEATAA 429
Query: 354 PKPDLRSRGLCLVPVASTYTVASETVPEFWHPTFGGTFR 392
K DL RGLCLVP++ST+ VASET +FW P FG FR
Sbjct: 430 SKRDLTGRGLCLVPISSTFAVASETPVDFWTP-FGAAFR 467
>Os01g0105700 Helix-loop-helix DNA-binding domain containing protein
Length = 388
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 18/172 (10%)
Query: 234 ANTLLAKSNSGSAQQ-----ICSSEGRKSVSDSPAAAKRPRIEV--PSPLPTFKVRKEKL 286
+NTL K N+ +A Q SS +S + P ++K+PR+E S LP+FKVRKEKL
Sbjct: 220 SNTLQMKRNTNAAAQGRGGRHGSSTEHRSSTALPPSSKKPRLESHSSSMLPSFKVRKEKL 279
Query: 287 GDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYL---KNGNPL----QH 339
GDRI ALQQLVSPFGKTDTASVL EAI YIKFL +QV +LS PYL KN L
Sbjct: 280 GDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQDQVETLSGPYLRSSKNSKKLACRAAQ 339
Query: 340 FQQKGSESTKDAEQPKPDLRSRGLCLVPVASTYTVASETVPEFW-HPTFGGT 390
Q+KG+ + DA K DLRSRGLCLVP++ T V +E W P F G
Sbjct: 340 QQRKGTSNGGDAAA-KLDLRSRGLCLVPLSCTSYVTNEN--GVWPPPNFRGN 388
>Os07g0471900 Helix-loop-helix DNA-binding domain containing protein
Length = 436
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/130 (50%), Positives = 86/130 (66%), Gaps = 4/130 (3%)
Query: 261 SPAAAKRPRIEVPSPLPTFK--VRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKF 318
S + K+ + E SP + K V K KLGD+ITALQQ+VSPFGKTDTASVL+EAI YIK+
Sbjct: 302 SEGSTKKSKHEATSPTSSLKSQVPKVKLGDKITALQQIVSPFGKTDTASVLYEAINYIKW 361
Query: 319 LHEQVASLSSPYLKNGNPLQHFQQKGSESTKDAEQPKPDLRSRGLCLVPVASTYTVASET 378
LHEQV LS PY+K+ + + + G K+ + DLRSRGLCLVPV+ T V +
Sbjct: 362 LHEQVQLLSDPYMKSSSS-KDYNAWGGLDRKEKADAEVDLRSRGLCLVPVSCTPQVYRDN 420
Query: 379 V-PEFWHPTF 387
P++W P +
Sbjct: 421 NGPDYWTPPY 430
>Os05g0228400 Helix-loop-helix DNA-binding domain containing protein
Length = 268
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 84/163 (51%), Gaps = 33/163 (20%)
Query: 263 AAAKRPRIEVPSPL-PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHE 321
+A K+ R++ S T KVRKE+LGDRITAL Q+VSPFGKTDTASVL E I YI+FL
Sbjct: 106 SALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLS 165
Query: 322 QVASLSSPYLKNGN---------------------PLQHFQQKGSESTKDA--------- 351
Q+ +LS PY+ + N P Q G+ +
Sbjct: 166 QIEALSYPYMGDANGTGPMQNGPVGERNPGLFPEYPGQLLNHNGNTGAQQPAAQPEQQGA 225
Query: 352 -EQPKPDLRSRGLCLVPVASTYTVASETVPEFWHPT-FGGTFR 392
+ K DLRSRGLCLVPV+ T + ++W P GG R
Sbjct: 226 NDDGKKDLRSRGLCLVPVSCTSHFGGDNAADYWAPAPLGGILR 268
>Os02g0276900 Helix-loop-helix DNA-binding domain containing protein
Length = 412
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 110/211 (52%), Gaps = 55/211 (26%)
Query: 229 SCSSNANTLLAKSNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPL-PTFKVRKEKLG 287
+ S +N +L SN+ S ++ S+ S AA K+ R + PSP T KVRKEKLG
Sbjct: 207 TTSLGSNGVLEFSNNTSPRECISTA-------SGAAFKKARTQEPSPAQATVKVRKEKLG 259
Query: 288 DRITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYL---------------K 332
DRITAL QLVSPFGKTDTASVL EAI YI+FLH Q+ +LSSPYL
Sbjct: 260 DRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLGNGGSSSNGGGGGGGG 319
Query: 333 NGNPLQH---------------------------FQQKGS-ESTKDAEQPKP-DLRSRGL 363
+ + LQH +++G + + E+ K DLRSRGL
Sbjct: 320 SNSKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGL 379
Query: 364 CLVPVASTYTVASETVP-EFWH--PTFGGTF 391
CLVPV+ T V + P ++W P FG F
Sbjct: 380 CLVPVSCTVDVGVDAGPADYWAAPPAFGIGF 410
>Os03g0759700 Similar to ER33 protein (Fragment)
Length = 317
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 280 KVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQH 339
+VR+E+LG+RI ALQQLVSPFGK+DTASVLHEA+ YI+FLH+QV LSSPYL+ P
Sbjct: 159 RVRRERLGERIIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSAR 218
Query: 340 FQQKGSESTKDAEQP---KP-DLRSRGLCLVPVASTYTV 374
++ + EQP +P DLRSRGLCLVP++ T V
Sbjct: 219 VPEQERGTPAAEEQPPALRPSDLRSRGLCLVPISCTEHV 257
>Os04g0565900 Helix-loop-helix DNA-binding domain containing protein
Length = 418
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 236 TLLAKSNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPL----PTFKVRKEKLGDRIT 291
T LA+S S S S +K +S+ K + + + P + K KLG++IT
Sbjct: 262 TRLARSCSSSG----SDRNKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKIT 317
Query: 292 ALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTKDA 351
ALQQ+VSPFGKTDTASVL E I YIKFLHEQ+ S PY+ N H G K
Sbjct: 318 ALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIHWGGEGKRKAG 377
Query: 352 EQPKPDLRSRGLCLVPVASTYTVASETV-PEFWHPTFGGTF 391
+ DLR RGLCLVPV+ T +++ PE W P + F
Sbjct: 378 LE--HDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYF 416
>Os01g0230200 Helix-loop-helix DNA-binding domain containing protein
Length = 406
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 91/155 (58%), Gaps = 32/155 (20%)
Query: 259 SDSPAAAKRPRIEVPSPL-PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIK 317
+++ +A K+ R++ S T KVRKE+LGDRITAL Q+VSPFGKTDTASVL E I YI+
Sbjct: 234 TETGSALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIR 293
Query: 318 FLHEQVASLSSPYLK---NGNPLQHFQQK------------------GSESTKDAEQPKP 356
FL Q+ +LS PYL + NP+Q QQ G ++ KD ++ +
Sbjct: 294 FLLGQIEALSYPYLGQCCSANPMQ--QQTGIMAGERSTDGLFPEFPAGQDAEKDGKKQQA 351
Query: 357 ----DLRSRGLCLVPVASTYTVASE----TVPEFW 383
DLRSRGLCLVPV+ +A++ +FW
Sbjct: 352 KKDDDLRSRGLCLVPVSCMPHLAADNDVVVGSDFW 386
>Os02g0671300 Helix-loop-helix DNA-binding domain containing protein
Length = 497
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 87/145 (60%), Gaps = 11/145 (7%)
Query: 255 RKSVSDSPAAAKRPRIEVPSPLPTFK-VRKEKLGDRITALQQLVSPFGKTDTASVLHEAI 313
RKS + K+ + E P + V K KLG++ITALQQ+VSPFGKTDTASVL E I
Sbjct: 354 RKSEERQESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETI 413
Query: 314 EYIKFLHEQVASLSSPYL------KNGNPLQHFQQKGSESTKDAEQPKPDLRSRGLCLVP 367
+YIKFLHEQV LS PY K GN + Q +E++K E + DLR+RGLCLVP
Sbjct: 414 KYIKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQ--AEASK-GETMEHDLRNRGLCLVP 470
Query: 368 VASTYTVASE-TVPEFWHPTFGGTF 391
V+ T V + ++W P + G
Sbjct: 471 VSWTPEVYRDGNAMDYWTPAYRGCL 495
>Os04g0493100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 156
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 16/125 (12%)
Query: 265 AKRPRIEVPSPLPTF-KVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQV 323
+K+PR P P K +K+K+G+R+ ALQQLVSPFGKTDTASVL EA YIKFLH+Q+
Sbjct: 37 SKKPRNTSPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQL 96
Query: 324 ASLSSPYLKNGNPLQHFQQKGSESTKDAEQPKPD---LRSRGLCLVPVASTYTVASETVP 380
LSSPY++ + A PD LR+RGLCLVPV T +
Sbjct: 97 EVLSSPYMR------------APPVPGAAPEDPDHYSLRNRGLCLVPVDQTLQLTQSNGA 144
Query: 381 EFWHP 385
+ W P
Sbjct: 145 DLWAP 149
>AK107340
Length = 372
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 4/81 (4%)
Query: 263 AAAKRPRIEVPSPL-PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHE 321
+A K+ R++ S T KVRKE+LGDRITAL Q+VSPFGKTDTASVL E I YI+FL
Sbjct: 253 SALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLS 312
Query: 322 QVASLSSPYLKNGN---PLQH 339
Q+ +LS PY+ + N P+Q+
Sbjct: 313 QIEALSYPYMGDANGTGPMQN 333
>Os03g0279500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 415
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/53 (69%), Positives = 44/53 (83%)
Query: 278 TFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPY 330
T K R +KLGDRITALQQLVSP+GKTDTASVLHEA I+ LH+Q+ L++PY
Sbjct: 273 TCKKRSQKLGDRITALQQLVSPYGKTDTASVLHEAAACIRQLHQQIQILTAPY 325
>AK064057
Length = 239
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 306 ASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTKDAEQP---KP-DLRSR 361
ASVLHE + YI+FLH+QV LSSPYL+ P ++ + EQP +P DLRSR
Sbjct: 108 ASVLHEELGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSDLRSR 167
Query: 362 GLCLVPVASTYTV 374
GLCLVP++ T V
Sbjct: 168 GLCLVPISCTEHV 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.125 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,827,508
Number of extensions: 584983
Number of successful extensions: 1679
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 16
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)