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Os08g0179400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.7 (0.0352) R2 : 0.46
β1 : 2.35 (0.149) R2dD : 0.451 R2D : 0.125
β2 : 0.775 (0.0859) R2dC : 0.0972 R2C : 0.0918
β3 : -1.78 (0.157) R2dE : 0.267 R2E : -0.0813
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.189 (0.0855) R2dN8 : 0.0111 R2N8 : -0.0533
σ : 0.628
deviance : 181.54
__
_____
C
peak time of C : 7.75
E
wheather : temperature
threshold : 9.844
memory length : 8724
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
174.99 0.622 6.65 2.71 0.76 -1.4 0.763 2.83 0.196 7.85 19.95 1503 -- --
180.27 0.625 6.7 2.32 0.771 -1.74 0.912 -- 0.184 7.66 10.21 8717 -- --
176.64 0.619 6.65 2.69 0.77 -1.41 -- 2.73 0.184 7.78 19.43 1498 -- --
181.54 0.628 6.7 2.35 0.775 -1.78 -- -- 0.189 7.75 9.844 8724 -- --
193.09 0.647 6.66 2.77 -- -1.66 -- 3.1 0.224 -- 21.89 2110 -- --
230.91 0.712 6.82 1.38 0.764 -- 0.762 -- -0.338 8.08 -- -- -- --
232.64 0.714 6.82 1.4 0.764 -- -- -- -0.339 8.01 -- -- -- --
210.58 0.676 6.72 2.4 -- -1.78 -- -- 0.214 -- 13.8 9339 -- --
264.82 0.758 6.87 -- 0.64 -0.753 -- -- -0.46 8.24 26.51 2142 -- --
264.59 0.76 6.84 1.41 -- -- -- -- -0.33 -- -- -- -- --
284.58 0.789 6.86 -- 0.774 -- -- -- -0.496 7.88 -- -- -- --
285.37 0.787 6.86 -- -- -0.969 -- -- -0.433 -- 25.4 2098 -- --
317.12 0.831 6.88 -- -- -- -- -- -0.486 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.94 precipitation 0.1 43200 > th dose independent rect. 17 1
2 162.40 precipitation 0.1 43200 < th dose independent rect. 17 1
3 162.40 precipitation 0.1 43200 > th dose dependent rect. 17 1
4 162.40 precipitation 0.1 43200 < th dose dependent rect. 17 1
5 162.50 humidity 90.0 14400 > th dose dependent rect. 21 3
6 162.74 humidity 90.0 14400 < th dose independent rect. 21 1
7 163.05 humidity 80.0 14400 > th dose independent rect. 17 1
8 163.15 wind 9.0 43200 > th dose dependent rect. 17 15
9 163.40 humidity 90.0 14400 > th dose dependent rect. 22 1
12 164.05 wind 9.0 43200 > th dose dependent rect. 20 5
14 164.43 wind 9.0 43200 > th dose dependent rect. 20 1
20 164.75 wind 9.0 43200 > th dose dependent sin 13 NA
25 165.13 radiation 1.0 43200 < th dose dependent rect. 19 5
29 165.67 humidity 80.0 14400 < th dose independent rect. 17 1
32 165.97 wind 9.0 43200 > th dose independent rect. 20 1
33 166.04 humidity 90.0 14400 > th dose independent rect. 21 1
34 166.04 atmosphere 995.0 43200 < th dose dependent rect. 15 1
36 166.20 wind 9.0 43200 > th dose dependent rect. 19 12
39 166.44 wind 9.0 43200 > th dose dependent rect. 17 8
40 166.44 wind 9.0 43200 > th dose dependent rect. 17 10
46 166.59 wind 9.0 43200 < th dose independent rect. 20 1
53 167.00 wind 9.0 43200 < th dose independent rect. 18 21
55 167.04 atmosphere 995.0 43200 < th dose independent rect. 14 1
58 167.18 humidity 80.0 14400 > th dose dependent rect. 18 1
61 167.31 wind 9.0 43200 > th dose independent rect. 17 22
65 167.46 temperature 20.0 1440 > th dose dependent rect. 20 1
74 167.77 atmosphere 995.0 43200 < th dose independent rect. 8 8
80 167.80 atmosphere 995.0 43200 < th dose independent rect. 11 5
83 167.85 atmosphere 995.0 43200 > th dose independent rect. 14 1
84 167.85 atmosphere 995.0 43200 > th dose independent rect. 12 4
85 167.85 atmosphere 995.0 43200 > th dose independent rect. 8 8
119 168.21 atmosphere 995.0 43200 > th dose independent rect. 12 1
146 168.77 wind 9.0 43200 > th dose independent rect. 19 5
152 168.84 wind 7.0 43200 > th dose dependent rect. 17 22
159 168.97 wind 9.0 43200 < th dose independent rect. 18 6
165 168.98 wind 9.0 43200 > th dose dependent sin 18 NA
169 169.00 atmosphere 1000.0 43200 < th dose dependent rect. 11 2
171 169.00 wind 7.0 43200 > th dose dependent rect. 6 15
183 169.25 wind 9.0 43200 > th dose independent rect. 19 8
186 169.28 wind 9.0 43200 > th dose dependent rect. 14 18
194 169.41 wind 7.0 43200 > th dose dependent rect. 13 22
198 169.44 wind 9.0 43200 > th dose dependent rect. 10 11
204 169.47 wind 9.0 43200 > th dose dependent rect. 10 15
206 169.50 wind 9.0 43200 > th dose dependent rect. 10 17
211 169.52 wind 7.0 43200 > th dose dependent rect. 23 22
221 169.58 wind 7.0 43200 > th dose dependent rect. 2 19
224 169.61 wind 9.0 43200 < th dose independent rect. 18 9
228 169.63 humidity 90.0 14400 < th dose independent rect. 18 5
230 169.65 wind 9.0 43200 < th dose independent rect. 13 22
245 169.79 wind 9.0 43200 > th dose independent rect. 18 13
248 169.83 radiation 1.0 14400 > th dose independent rect. 18 12
250 169.84 wind 9.0 43200 > th dose dependent rect. 10 21
282 169.95 wind 9.0 43200 > th dose independent rect. 17 16
284 169.96 wind 7.0 43200 > th dose dependent rect. 6 9
311 170.12 wind 9.0 43200 > th dose independent rect. 13 22
325 170.20 atmosphere 995.0 43200 > th dose independent sin 22 NA
349 170.23 wind 7.0 43200 > th dose dependent rect. 6 19
382 170.35 radiation 1.0 14400 > th dose independent rect. 5 1
403 170.43 atmosphere 995.0 43200 < th dose independent sin 22 NA
430 170.53 radiation 1.0 14400 < th dose independent rect. 5 1
479 170.83 wind 9.0 43200 < th dose independent rect. 18 14
496 170.92 radiation 1.0 43200 < th dose dependent rect. 19 8
498 170.93 wind 7.0 43200 > th dose dependent rect. 2 23
525 171.08 humidity 80.0 43200 > th dose independent rect. 23 2
535 171.11 wind 7.0 43200 > th dose dependent no NA NA
551 171.20 wind 9.0 43200 > th dose independent sin 12 NA
553 171.24 radiation 1.0 14400 < th dose independent rect. 24 6
581 171.31 wind 7.0 43200 > th dose dependent rect. 2 14
584 171.33 radiation 1.0 14400 < th dose independent rect. 20 10
585 171.33 wind 9.0 43200 < th dose independent rect. 23 22
586 171.33 wind 7.0 43200 > th dose dependent sin 1 NA
594 171.37 wind 9.0 43200 > th dose dependent rect. 17 4
607 171.43 humidity 90.0 14400 > th dose independent rect. 18 6
612 171.45 wind 7.0 43200 > th dose dependent rect. 24 16
622 171.53 wind 9.0 43200 < th dose independent rect. 6 15
625 171.55 wind 9.0 43200 > th dose independent rect. 23 22
640 171.64 wind 9.0 43200 > th dose independent rect. 6 15
644 171.65 wind 9.0 43200 < th dose independent rect. 6 9
655 171.72 wind 9.0 43200 < th dose independent rect. 2 19
683 171.89 wind 9.0 43200 > th dose independent rect. 2 19
691 171.92 wind 7.0 43200 > th dose independent rect. 6 1
700 171.97 humidity 80.0 43200 < th dose independent rect. 23 1
701 171.97 humidity 90.0 14400 > th dose dependent sin 15 NA
732 172.08 wind 3.0 43200 < th dose dependent rect. 8 1
738 172.10 wind 9.0 43200 < th dose independent rect. 17 18
745 172.14 wind 9.0 43200 < th dose independent rect. 6 21
752 172.17 wind 9.0 43200 > th dose independent rect. 6 21
766 172.24 wind 9.0 43200 > th dose independent rect. 6 19
779 172.29 temperature 20.0 1440 > th dose dependent rect. 17 16
786 172.32 wind 9.0 43200 < th dose independent rect. 6 19
791 172.34 wind 9.0 43200 < th dose independent rect. 2 13
800 172.37 wind 9.0 43200 < th dose independent rect. 17 16
822 172.43 wind 9.0 43200 < th dose independent rect. 24 15
855 172.56 wind 9.0 43200 > th dose independent rect. 2 23
864 172.59 wind 9.0 43200 < th dose independent rect. 2 23
867 172.61 precipitation 0.1 14400 < th dose independent rect. 17 7
868 172.61 precipitation 0.1 14400 < th dose dependent rect. 17 7
884 172.65 wind 1.0 43200 > th dose dependent rect. 4 12
891 172.68 wind 9.0 43200 > th dose independent no NA NA
903 172.71 wind 9.0 43200 < th dose independent no NA NA
904 172.71 precipitation 0.1 14400 > th dose independent rect. 17 7
956 172.84 humidity 80.0 43200 < th dose dependent rect. 22 1
966 172.86 temperature 20.0 270 > th dose dependent rect. 16 19