Os02g0276900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os02g0276900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.4 | 0.272 | 9.36 | -0.539 | 0.668 | -0.568 | 0.221 | -0.095 | -0.432 | 5.59 | 83 | 674 | -- | -- |
| 33.42 | 0.269 | 9.36 | -0.544 | 0.668 | -0.57 | 0.183 | -- | -0.435 | 5.61 | 83 | 676 | -- | -- |
| 33.5 | 0.27 | 9.36 | -0.545 | 0.665 | -0.577 | -- | -0.0176 | -0.435 | 5.69 | 83.22 | 686 | -- | -- |
| 33.33 | 0.269 | 9.36 | -0.536 | 0.647 | -0.574 | -- | -- | -0.448 | 5.73 | 84.3 | 690 | -- | -- |
| 41.48 | 0.3 | 9.39 | -0.52 | -- | -0.842 | -- | 0.0372 | -0.452 | -- | 81.74 | 1236 | -- | -- |
| 41.25 | 0.301 | 9.36 | -0.562 | 0.435 | -- | 0.329 | -- | -0.403 | 3.65 | -- | -- | -- | -- |
| 41.57 | 0.302 | 9.36 | -0.568 | 0.438 | -- | -- | -- | -0.405 | 3.74 | -- | -- | -- | -- |
| 41.23 | 0.299 | 9.36 | -0.573 | -- | -0.859 | -- | -- | -0.424 | -- | 79 | 1220 | -- | -- |
| 40.47 | 0.296 | 9.36 | -- | 0.681 | -0.594 | -- | -- | -0.434 | 5.65 | 85.8 | 608 | -- | -- |
| 52.17 | 0.338 | 9.36 | -0.549 | -- | -- | -- | -- | -0.393 | -- | -- | -- | -- | -- |
| 50.06 | 0.331 | 9.35 | -- | 0.427 | -- | -- | -- | -0.342 | 3.76 | -- | -- | -- | -- |
| 47.8 | 0.322 | 9.37 | -- | -- | -0.81 | -- | -- | -0.437 | -- | 85 | 1225 | -- | -- |
| 60.14 | 0.362 | 9.35 | -- | -- | -- | -- | -- | -0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.45 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 4 | 31.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 9 | 31.65 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 16 | 31.73 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 156 | 32.97 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 14 |
| 166 | 33.06 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 174 | 33.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 23 | 15 |
| 193 | 33.21 | humidity | 50 | 1440 | > th | dose dependent | sin | 5 | NA |
| 194 | 33.21 | humidity | 90 | 720 | < th | dose dependent | sin | 9 | NA |
| 210 | 33.26 | humidity | 70 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 231 | 33.32 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 16 |
| 263 | 33.42 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 279 | 33.46 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 282 | 33.46 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 300 | 33.49 | humidity | 70 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 306 | 33.50 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 312 | 33.52 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 325 | 33.54 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 334 | 33.55 | humidity | 80 | 720 | > th | dose dependent | rect. | 3 | 20 |
| 382 | 33.64 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 21 |
| 392 | 33.66 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 403 | 33.68 | humidity | 70 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 417 | 33.69 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 23 |