BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0276900 Os02g0276900|AK072848
(412 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0276900 Helix-loop-helix DNA-binding domain containing... 605 e-173
Os05g0228400 Helix-loop-helix DNA-binding domain containing... 184 9e-47
Os01g0230200 Helix-loop-helix DNA-binding domain containing... 159 3e-39
AK107340 147 2e-35
Os05g0501200 Basic helix-loop-helix dimerisation region bHL... 125 7e-29
Os01g0784900 Basic helix-loop-helix dimerisation region bHL... 118 6e-27
Os04g0631600 Basic helix-loop-helix dimerisation region bHL... 111 1e-24
Os03g0759700 Similar to ER33 protein (Fragment) 107 1e-23
Os01g0105700 Helix-loop-helix DNA-binding domain containing... 107 2e-23
Os08g0179400 Helix-loop-helix DNA-binding domain containing... 101 9e-22
Os07g0471900 Helix-loop-helix DNA-binding domain containing... 99 7e-21
Os02g0671300 Helix-loop-helix DNA-binding domain containing... 96 4e-20
Os04g0493100 Basic helix-loop-helix dimerisation region bHL... 95 1e-19
Os04g0565900 Helix-loop-helix DNA-binding domain containing... 81 2e-15
Os03g0279500 Basic helix-loop-helix dimerisation region bHL... 77 3e-14
Os12g0180833 Similar to ER33 protein 66 5e-11
>Os02g0276900 Helix-loop-helix DNA-binding domain containing protein
Length = 412
Score = 605 bits (1559), Expect = e-173, Method: Compositional matrix adjust.
Identities = 310/412 (75%), Positives = 310/412 (75%)
Query: 1 MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPAXXXXXXXXXXXXXXXXXXXX 60
MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPA
Sbjct: 1 MDRGVLHKSSALVGEMGEGHGWWSVNNLRPPFVEQLHNPASLFLPSSTTTSTTPSSSSSP 60
Query: 61 XXXXXXXXXXNHYPLPXXXXXXXXXXPWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNK 120
NHYPLP PWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNK
Sbjct: 61 LHSFSSLLLSNHYPLPSTATTSTAAAPWHDTGSRHGQHLQDSWNHILLGGLASGEEGYNK 120
Query: 121 NWEGQVLFPTTPXXXXXXXDHGXXXXXXXXXXXXXXXXXXXXDDASQLAVAARXXXXXXX 180
NWEGQVLFPTTP DHG DDASQLAVAAR
Sbjct: 121 NWEGQVLFPTTPAAAAAEADHGSNSYNNIYSTTTTSHGSSTSDDASQLAVAARPSSSPWG 180
Query: 181 XXXXXXXXXNALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPRECISTASGAAFKKAR 240
NALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPRECISTASGAAFKKAR
Sbjct: 181 GIHGHHPHHNALQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPRECISTASGAAFKKAR 240
Query: 241 TQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSS 300
TQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSS
Sbjct: 241 TQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSS 300
Query: 301 PYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQP 360
PYL KLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQP
Sbjct: 301 PYLGNGGSSSNGGGGGGGGSNSKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQP 360
Query: 361 DQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR 412
DQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR
Sbjct: 361 DQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR 412
>Os05g0228400 Helix-loop-helix DNA-binding domain containing protein
Length = 268
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 139/230 (60%), Gaps = 39/230 (16%)
Query: 196 ASSPRSSCITSTTSLGSNGVLEFSNNTSP-------------RECISTASGAAFKKARTQ 242
ASSPRS CIT TSLGSN +L+FSN +P EC STA+G+A KKAR Q
Sbjct: 59 ASSPRS-CIT--TSLGSN-MLDFSNTAAPPELRSHHHNSDNSSECNSTATGSALKKARVQ 114
Query: 243 EPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPY 302
S AQ+T+KVRKE+LGDRITALHQ+VSPFGKTDTASVL E IGYIRFL QIEALS PY
Sbjct: 115 ASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLSQIEALSYPY 174
Query: 303 LXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERN-SIFPEDPGQLLHDN---AVKKRG 358
+ +Q+ P GERN +FPE PGQLL+ N ++
Sbjct: 175 M------------GDANGTGPMQNGP-----VGERNPGLFPEYPGQLLNHNGNTGAQQPA 217
Query: 359 QPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGI 408
+ + + DLRSRGLCLVPVSCT G D ADYWA P GI
Sbjct: 218 AQPEQQGANDDGKKDLRSRGLCLVPVSCTSHFGGD-NAADYWAPAPLGGI 266
>Os01g0230200 Helix-loop-helix DNA-binding domain containing protein
Length = 406
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 132/235 (56%), Gaps = 53/235 (22%)
Query: 192 LQQQASSPRSSCITSTTSLGSNGVLEFSNNT--------------------SPRECISTA 231
LQ ASSPRS C+T T+ LGS+ +++FSN + EC ST
Sbjct: 179 LQAAASSPRS-CVT-TSGLGSS-MMDFSNTAAVAPAAEPELTRKHHAGQSDNSSECNSTE 235
Query: 232 SGAAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFL 291
+G+A KKAR Q S AQ+T+KVRKE+LGDRITALHQ+VSPFGKTDTASVL E IGYIRFL
Sbjct: 236 TGSALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFL 295
Query: 292 HGQIEALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNS--IFPEDP-GQL 348
GQIEALS PYL Q + + GER++ +FPE P GQ
Sbjct: 296 LGQIEALSYPYLGQCCSANPM--------------QQQTGIMAGERSTDGLFPEFPAGQD 341
Query: 349 LHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGP---ADYW 400
+ K++ + D DLRSRGLCLVPVSC + D +D+W
Sbjct: 342 AEKDGKKQQAKKDD----------DLRSRGLCLVPVSCMPHLAADNDVVVGSDFW 386
>AK107340
Length = 372
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 110/177 (62%), Gaps = 35/177 (19%)
Query: 196 ASSPRSSCITSTTSLGSNGVLEFSNNTSP-------------RECISTASGAAFKKARTQ 242
ASSPRS CIT TSLGSN +L+FSN +P EC STA+G+A KKAR Q
Sbjct: 206 ASSPRS-CIT--TSLGSN-MLDFSNTAAPPELRSHHHNSDNSSECNSTATGSALKKARVQ 261
Query: 243 EPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPY 302
S AQ+T+KVRKE+LGDRITALHQ+VSPFGKTDTASVL E IGYIRFL QIEALS PY
Sbjct: 262 ASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLSQIEALSYPY 321
Query: 303 LXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERN-SIFPEDPGQLLHDNAVKKRG 358
+ +Q+ P GERN +FPE PGQLL+ + G
Sbjct: 322 M------------GDANGTGPMQNGPV-----GERNPGLFPEYPGQLLNHQGDTQLG 361
>Os05g0501200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 323
Score = 125 bits (313), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 111/219 (50%), Gaps = 48/219 (21%)
Query: 192 LQQQASSPRSSCITSTTSLGSNGVLEFSNNTSPRECISTASGAAFKKARTQEPSPAQATV 251
LQQQ S P + S T + + + + SP S S AA KK R + PSP T
Sbjct: 152 LQQQQSFPGGHHVVSNTDRLHDHHQD-AGSPSPATRSSPGSPAAAKKPRIEAPSP-MPTF 209
Query: 252 KVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLXXXXXXXX 311
KVRKEKLGDRITAL QLVSPFGKTDTASVL EAI YI+FLH Q+ +LSSPYL
Sbjct: 210 KVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVASLSSPYL-------- 261
Query: 312 XXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKT 371
+LQHQ + +V G +C E K
Sbjct: 262 -----RCGRPVQLQHQQGSHKVNG-----------------------------NC-EGKQ 286
Query: 372 MDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGF 410
+DLRSRGLCLVPV+ T V + ++W P FG F
Sbjct: 287 LDLRSRGLCLVPVASTYTVASETA-TEFWH--PTFGGTF 322
>Os01g0784900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 392
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 113/223 (50%), Gaps = 60/223 (26%)
Query: 195 QASSPRSSCITSTTSLGSNGVLEFSNNTSPRECISTA-------SGAAFKKARTQEPSPA 247
QA P+ SC S +N +L SN+ S ++ S+ S AA K+ R + PSP
Sbjct: 222 QAMQPKPSC-----SSNANTLLAKSNSGSAQQICSSEGRKSVSDSPAAAKRPRIEVPSPL 276
Query: 248 QATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLXXXX 307
T KVRKEKLGDRITAL QLVSPFGKTDTASVL EAI YI+FLH Q+ +LSSPYL
Sbjct: 277 -PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYL---- 331
Query: 308 XXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCE 367
LQH +++G + + E
Sbjct: 332 -----------KNGNPLQH---------------------------FQQKGS-ESTKDAE 352
Query: 368 EAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGF 410
+ K DLRSRGLCLVPV+ T V + P ++W P FG F
Sbjct: 353 QPKP-DLRSRGLCLVPVASTYTVASETVP-EFWH--PTFGGTF 391
>Os04g0631600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 437
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 91/186 (48%), Gaps = 51/186 (27%)
Query: 227 CISTASGAAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIG 286
+ T AFKK R + PSP T KVRKEKLGDRITAL QLVSPFGKTDTASVL E I
Sbjct: 303 SVITKKETAFKKPRLETPSPL-PTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHETIE 361
Query: 287 YIRFLHGQIEALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPG 346
YI+FLH Q+ ALS+PYL A +V +NS
Sbjct: 362 YIKFLHDQVGALSAPYLKNG-----------------------AHQVPHLKNS------- 391
Query: 347 QLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAF 406
PD+ + E + L+ RGLCLVP+S T V + P + W F
Sbjct: 392 ------------SPDKSKHGE----ISLKGRGLCLVPISSTFAVASEV-PVELWT---PF 431
Query: 407 GIGFGR 412
G F R
Sbjct: 432 GANFIR 437
>Os03g0759700 Similar to ER33 protein (Fragment)
Length = 317
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 79/139 (56%), Gaps = 40/139 (28%)
Query: 252 KVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLXXXXXXXX 311
+VR+E+LG+RI AL QLVSPFGK+DTASVL EA+GYIRFLH Q++ LSSPY
Sbjct: 159 RVRRERLGERIIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPY--------- 209
Query: 312 XXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKT 371
LQ P ++RV PE ++RG P +E +
Sbjct: 210 ------------LQRLPPSARV--------PE-----------QERGTPAAEEQPPALRP 238
Query: 372 MDLRSRGLCLVPVSCTVDV 390
DLRSRGLCLVP+SCT V
Sbjct: 239 SDLRSRGLCLVPISCTEHV 257
>Os01g0105700 Helix-loop-helix DNA-binding domain containing protein
Length = 388
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 90/179 (50%), Gaps = 43/179 (24%)
Query: 229 STASGAAFKKARTQEPSPAQ-ATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGY 287
STA + KK R + S + + KVRKEKLGDRI AL QLVSPFGKTDTASVL+EAIGY
Sbjct: 249 STALPPSSKKPRLESHSSSMLPSFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGY 308
Query: 288 IRFLHGQIEALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQ 347
I+FL Q+E LS PYL KL + + +G N
Sbjct: 309 IKFLQDQVETLSGPYL------------RSSKNSKKLACRAAQQQRKGTSNG-------- 348
Query: 348 LLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAF 406
D A K +DLRSRGLCLVP+SCT V + G W PP F
Sbjct: 349 --GDAAAK----------------LDLRSRGLCLVPLSCTSYVTNENG---VW-PPPNF 385
>Os08g0179400 Helix-loop-helix DNA-binding domain containing protein
Length = 467
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 85/199 (42%), Gaps = 65/199 (32%)
Query: 236 FKKARTQEPSPAQATVK------------------------VRKEKLGDRITALHQLVSP 271
KK+RT PSP T K VRKEKLGDR+TAL QLVSP
Sbjct: 309 LKKSRTGTPSPLPTTFKACVYIYIIFNLSQMVIDFLPIKFHVRKEKLGDRVTALQQLVSP 368
Query: 272 FGKTDTASVLLEAIGYIRFLHGQIEALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEAS 331
FGKTDTASVL E I YI+FLH Q+ ALS+PYL Q P
Sbjct: 369 FGKTDTASVLHETIEYIKFLHDQVGALSAPYL------------------KNRQQVPHLK 410
Query: 332 RVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVG 391
G N + G A KR DL RGLCLVP+S T V
Sbjct: 411 NSTGVDN----DGGGGGGEATAASKR---------------DLTGRGLCLVPISSTFAVA 451
Query: 392 VDAGPADYWAAPPAFGIGF 410
+ P D+W FG F
Sbjct: 452 SET-PVDFWT---PFGAAF 466
>Os07g0471900 Helix-loop-helix DNA-binding domain containing protein
Length = 436
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 83/168 (49%), Gaps = 46/168 (27%)
Query: 237 KKARTQEPSPAQA-TVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQI 295
KK++ + SP + +V K KLGD+ITAL Q+VSPFGKTDTASVL EAI YI++LH Q+
Sbjct: 307 KKSKHEATSPTSSLKSQVPKVKLGDKITALQQIVSPFGKTDTASVLYEAINYIKWLHEQV 366
Query: 296 EALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVK 355
+ LS PY+ S + N+
Sbjct: 367 QLLSDPYMK--------------------------SSSSKDYNAW--------------- 385
Query: 356 KRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAP 403
G D+ E + +DLRSRGLCLVPVSCT V D DYW P
Sbjct: 386 --GGLDRKEKAD--AEVDLRSRGLCLVPVSCTPQVYRDNNGPDYWTPP 429
>Os02g0671300 Helix-loop-helix DNA-binding domain containing protein
Length = 497
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 83/173 (47%), Gaps = 43/173 (24%)
Query: 234 AAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHG 293
+ KK++ + + V K KLG++ITAL Q+VSPFGKTDTASVL E I YI+FLH
Sbjct: 362 STVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHE 421
Query: 294 QIEALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNA 353
Q++ LS PY +SR + NS+ D A
Sbjct: 422 QVQLLSEPYT-------------------------NSSRSNKQGNSV-------PWGDQA 449
Query: 354 VKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAF 406
+G E DLR+RGLCLVPVS T +V D DYW PA+
Sbjct: 450 EASKG---------ETMEHDLRNRGLCLVPVSWTPEVYRDGNAMDYWT--PAY 491
>Os04g0493100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 156
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 77/165 (46%), Gaps = 54/165 (32%)
Query: 237 KKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIE 296
KK R P A + K +K+K+G+R+ AL QLVSPFGKTDTASVL EA GYI+FLH Q+E
Sbjct: 38 KKPRNTSPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLE 97
Query: 297 ALSSPYLXXXXXXXXXXXXXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKK 356
LSSPY+ A V G PEDP
Sbjct: 98 VLSSPYM-------------------------RAPPVPG----AAPEDPDHY-------- 120
Query: 357 RGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWA 401
LR+RGLCLVPV T+ + G AD WA
Sbjct: 121 ----------------SLRNRGLCLVPVDQTLQLTQSNG-ADLWA 148
>Os04g0565900 Helix-loop-helix DNA-binding domain containing protein
Length = 418
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 73/158 (46%), Gaps = 48/158 (30%)
Query: 255 KEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLXXXXXXXXXXX 314
K KLG++ITAL Q+VSPFGKTDTASVLLE I YI+FLH QI+ S PY+
Sbjct: 309 KVKLGEKITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMT---------- 358
Query: 315 XXXXXXXXKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDL 374
NS + G + K++ + D L
Sbjct: 359 -----------------------NST---NKGHIHWGGEGKRKAGLEHD----------L 382
Query: 375 RSRGLCLVPVSCTVDVGVDAGPADYWAAPPAFGIGFGR 412
R RGLCLVPVS T D+ + WA PA+ F R
Sbjct: 383 RGRGLCLVPVSWTSQEYCDSILPECWA--PAYRNYFYR 418
>Os03g0279500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 415
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/55 (69%), Positives = 44/55 (80%)
Query: 248 QATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPY 302
+AT K R +KLGDRITAL QLVSP+GKTDTASVL EA IR LH QI+ L++PY
Sbjct: 271 KATCKKRSQKLGDRITALQQLVSPYGKTDTASVLHEAAACIRQLHQQIQILTAPY 325
>Os12g0180833 Similar to ER33 protein
Length = 132
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 10/69 (14%)
Query: 225 RECISTASGAAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEA 284
R C S+ S KK+ Q P K LG++I AL Q++SPFGKTDTASVLLE
Sbjct: 48 RSCSSSGSDPNKKKSEHQSP----------KVNLGEKIMALQQIMSPFGKTDTASVLLET 97
Query: 285 IGYIRFLHG 293
I YI+FLHG
Sbjct: 98 ITYIKFLHG 106
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,811,221
Number of extensions: 410055
Number of successful extensions: 899
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 885
Number of HSP's successfully gapped: 16
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)