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Os04g0493100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.63 (0.0336) R2 : 0.654
β1 : -2.69 (0.124) R2dD : 0.378 R2D : 0.316
β2 : 1.56 (0.112) R2dC : 0.284 R2C : -0.0729
β3 : -1.21 (0.101) R2dE : 0.218 R2E : -0.0973
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.877 (0.0722) R2dN8 : 0.153 R2N8 : 0.0681
σ : 0.625
deviance : 180.29
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_____
C
peak time of C : 13.6
E
wheather : temperature
threshold : 25.3
memory length : 88
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.08
open length of G : 7.92

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.27 0.627 9.63 -2.69 1.54 -1.19 -0.584 -0.259 -0.882 13.5 25.25 89 9.02 8.02
178.42 0.622 9.63 -2.66 1.54 -1.19 -0.7 -- -0.875 13.5 25.24 88 9.02 8
179.39 0.624 9.63 -2.71 1.57 -1.21 -- -0.527 -0.9 13.5 25.23 87 9.03 8.01
180.29 0.625 9.63 -2.69 1.56 -1.21 -- -- -0.877 13.6 25.3 88 9.08 7.92
254.13 0.742 9.66 -2.87 -- -0.318 -- -0.263 -0.949 -- 27.71 63 9.32 7.63
231.39 0.713 9.66 -2.84 0.607 -- -1.15 -- -0.997 12.5 -- -- -- --
236.93 0.721 9.66 -2.88 0.614 -- -- -- -1 12.8 -- -- -- --
253.1 0.741 9.68 -2.91 -- -0.319 -- -- -1 -- 25.67 64 11.1 5.97
364.83 0.89 9.54 -- 1.61 -1.31 -- -- -0.618 13.8 25.5 82 9.12 8.15
260.51 0.754 9.67 -2.91 -- -- -- -- -1.01 -- -- -- -- --
456.14 0.999 9.59 -- 0.661 -- -- -- -0.68 13 -- -- -- --
424.54 0.96 9.43 -- -- -0.976 -- -- -0.326 -- 27 1524 10.4 6.65
483.32 1.03 9.6 -- -- -- -- -- -0.69 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 179.34 temperature 25.0 90 > th dose independent rect. 9 8
3 183.40 temperature 10.0 90 > th dose dependent rect. 23 18
4 184.01 temperature 20.0 90 > th dose dependent rect. 9 8
17 187.75 temperature 10.0 270 > th dose dependent rect. 23 15
48 190.74 temperature 25.0 270 < th dose independent rect. 4 8
125 194.37 atmosphere 1015.0 90 < th dose independent rect. 23 18
152 195.95 temperature 25.0 270 > th dose independent rect. 1 14
170 196.33 radiation 1.0 90 > th dose independent rect. 17 20
173 196.34 wind 7.0 90 < th dose independent rect. 23 18
179 196.52 temperature 30.0 270 < th dose dependent rect. 4 7
190 197.03 temperature 10.0 90 > th dose dependent rect. 17 7
220 197.93 wind 1.0 90 > th dose independent rect. 9 8
225 198.16 humidity 50.0 10 > th dose independent rect. 17 7
227 198.22 wind 7.0 270 < th dose independent rect. 23 16
232 198.29 precipitation 0.1 90 < th dose independent rect. 23 18
233 198.29 precipitation 0.1 90 < th dose dependent rect. 23 18
251 198.65 temperature 10.0 90 > th dose independent rect. 17 6
252 198.65 radiation 20.0 90 < th dose independent rect. 17 6
255 198.65 temperature 10.0 90 > th dose independent rect. 23 18
277 198.97 atmosphere 1015.0 270 < th dose independent rect. 23 15
280 198.99 wind 1.0 90 > th dose independent rect. 11 6
292 199.22 wind 1.0 90 > th dose independent rect. 24 17
311 199.55 wind 9.0 90 < th dose independent rect. 17 6
325 199.68 atmosphere 995.0 90 > th dose independent rect. 17 6
329 199.78 temperature 30.0 10 < th dose independent rect. 5 7
334 199.82 wind 1.0 90 > th dose independent rect. 17 6
340 199.91 radiation 20.0 10 < th dose dependent rect. 17 7
341 199.92 radiation 40.0 90 < th dose independent rect. 17 18
350 200.01 atmosphere 1010.0 90 < th dose independent rect. 11 6
370 200.16 atmosphere 995.0 90 > th dose independent rect. 23 18
378 200.31 wind 9.0 90 < th dose independent rect. 9 8
379 200.33 wind 9.0 90 < th dose independent rect. 11 6
399 200.55 atmosphere 1010.0 270 < th dose independent rect. 9 6
428 200.83 atmosphere 1015.0 90 < th dose dependent rect. 23 18
444 201.00 wind 7.0 270 < th dose independent rect. 11 16
445 201.01 temperature 10.0 270 > th dose independent rect. 14 9
446 201.01 temperature 10.0 270 > th dose independent rect. 23 15
447 201.01 atmosphere 995.0 270 > th dose independent rect. 23 15
468 201.21 radiation 40.0 270 < th dose independent rect. 14 9
477 201.27 precipitation 0.1 90 < th dose independent rect. 11 6
478 201.27 precipitation 0.1 90 < th dose dependent rect. 11 6
495 201.43 wind 1.0 270 > th dose independent rect. 15 8
497 201.45 temperature 10.0 90 > th dose independent rect. 11 6
499 201.45 temperature 10.0 90 > th dose independent rect. 17 18
501 201.46 precipitation 0.1 90 < th dose independent rect. 17 6
504 201.46 precipitation 0.1 90 < th dose dependent rect. 17 6
534 201.79 temperature 10.0 90 > th dose independent rect. 9 8
536 201.79 temperature 10.0 90 > th dose independent rect. 17 16
549 201.89 precipitation 0.1 90 < th dose independent rect. 9 8
550 201.89 precipitation 0.1 90 < th dose dependent rect. 9 8
559 201.99 humidity 90.0 270 < th dose independent rect. 15 7
561 202.01 humidity 90.0 90 < th dose independent rect. 17 6
591 202.30 atmosphere 1015.0 90 < th dose independent rect. 17 6
602 202.37 atmosphere 995.0 90 > th dose independent rect. 17 18
620 202.45 humidity 50.0 270 > th dose independent rect. 23 15
628 202.51 radiation 10.0 30 < th dose dependent sin 18 NA
640 202.55 radiation 1.0 10 > th dose independent rect. 18 18
651 202.59 wind 9.0 90 < th dose independent rect. 17 16
656 202.63 wind 1.0 90 > th dose dependent rect. 17 6
658 202.65 precipitation 0.1 270 < th dose independent rect. 15 8
659 202.65 precipitation 0.1 270 < th dose dependent rect. 15 8
663 202.70 humidity 50.0 270 > th dose independent rect. 11 16
664 202.70 wind 9.0 90 < th dose independent rect. 17 18
665 202.71 atmosphere 995.0 90 > th dose independent rect. 11 6
671 202.75 atmosphere 995.0 90 > th dose independent rect. 17 16
674 202.76 radiation 20.0 30 < th dose dependent sin 8 NA
692 202.90 radiation 40.0 90 < th dose independent rect. 11 6
704 203.07 radiation 40.0 90 < th dose independent rect. 17 16
712 203.12 temperature 10.0 1440 > th dose independent rect. 18 7
715 203.12 humidity 50.0 1440 > th dose independent rect. 18 7
717 203.12 radiation 20.0 1440 < th dose independent rect. 18 7
729 203.12 temperature 10.0 1440 > th dose independent rect. 1 17
733 203.12 atmosphere 1015.0 90 < th dose dependent rect. 17 6
736 203.18 wind 9.0 270 < th dose independent rect. 15 8
758 203.35 temperature 25.0 270 > th dose independent sin 3 NA
782 203.54 wind 7.0 270 < th dose independent rect. 11 3
784 203.58 humidity 90.0 90 < th dose dependent rect. 17 7
789 203.62 humidity 50.0 270 > th dose independent rect. 9 7
790 203.63 humidity 50.0 90 > th dose independent rect. 17 16
798 203.68 temperature 10.0 270 > th dose dependent rect. 15 8
800 203.70 atmosphere 1015.0 270 < th dose independent rect. 11 16
805 203.73 atmosphere 1015.0 90 < th dose dependent rect. 11 6
811 203.79 wind 3.0 270 > th dose independent rect. 17 1
822 203.85 humidity 90.0 90 < th dose dependent rect. 17 16
825 203.86 atmosphere 995.0 270 > th dose independent rect. 9 7
829 203.89 humidity 50.0 90 > th dose independent rect. 17 18
833 203.92 radiation 1.0 10 > th dose independent rect. 5 7
869 203.97 wind 1.0 90 > th dose independent rect. 3 14
870 203.98 temperature 10.0 270 > th dose independent rect. 2 9
871 203.98 atmosphere 995.0 270 > th dose independent rect. 2 9
872 203.98 atmosphere 1015.0 270 < th dose independent rect. 2 9
873 203.98 temperature 10.0 270 > th dose independent rect. 11 15
886 204.03 precipitation 0.1 270 < th dose independent rect. 11 16
887 204.03 precipitation 0.1 270 < th dose dependent rect. 11 16
889 204.04 radiation 1.0 90 < th dose dependent sin 9 NA
898 204.09 humidity 50.0 10 > th dose independent rect. 24 17
908 204.13 humidity 50.0 270 > th dose independent rect. 2 9
927 204.19 wind 9.0 270 < th dose independent rect. 2 9
940 204.25 wind 7.0 10 < th dose independent rect. 12 17
944 204.28 temperature 25.0 270 < th dose independent sin 3 NA
955 204.34 radiation 10.0 30 < th dose independent sin 16 NA
957 204.35 precipitation 0.1 270 < th dose independent rect. 2 9
958 204.35 precipitation 0.1 270 < th dose dependent rect. 2 9
971 204.44 wind 1.0 270 > th dose dependent rect. 17 1
984 204.51 radiation 1.0 90 < th dose independent sin 9 NA
995 204.53 radiation 1.0 90 > th dose independent sin 8 NA
996 204.53 atmosphere 1015.0 270 < th dose independent rect. 20 8