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Os04g0631600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.54 (0.0241) R2 : 0.364
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.928 (0.063) R2dC : 0.304 R2C : 0.275
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.357 (0.0507) R2dN8 : 0.0894 R2N8 : 0.0607
σ : 0.454
deviance : 94.17
__
_____
C
peak time of C : 5.52
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.62 0.422 9.53 0.472 0.779 0.172 0.216 0.676 -0.263 5.79 25.3 216 -- --
81.36 0.423 9.51 0.639 0.813 0.191 0.586 -- -0.195 6.03 25.2 205 -- --
80.71 0.418 9.53 0.453 0.778 0.171 -- 0.741 -0.268 5.76 25.29 212 -- --
82.18 0.425 9.51 0.643 0.818 0.188 -- -- -0.199 5.95 25.2 205 -- --
100.13 0.466 9.52 0.622 -- 0.576 -- 0.711 -0.135 -- 25.8 293 -- --
83.86 0.429 9.53 0.599 0.915 -- 0.564 -- -0.287 5.62 -- -- -- --
84.63 0.431 9.53 0.602 0.918 -- -- -- -0.29 5.55 -- -- -- --
101.32 0.469 9.5 0.785 -- 0.594 -- -- -0.0674 -- 25.7 264 -- --
92.89 0.451 9.53 -- 0.855 0.135 -- -- -0.295 5.79 25.2 205 -- --
128.43 0.53 9.54 0.632 -- -- -- -- -0.268 -- -- -- -- --
94.17 0.454 9.54 -- 0.928 -- -- -- -0.357 5.52 -- -- -- --
117.13 0.504 9.51 -- -- 0.525 -- -- -0.136 -- 25.7 244 -- --
138.96 0.55 9.56 -- -- -- -- -- -0.338 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 74.22 temperature 10.0 90 > th dose dependent rect. 20 7
3 74.74 temperature 10.0 270 > th dose dependent rect. 20 16
4 75.03 temperature 15.0 270 > th dose dependent rect. 20 5
5 75.11 temperature 15.0 90 > th dose independent rect. 20 7
6 75.12 radiation 1.0 90 < th dose independent rect. 3 17
10 75.24 radiation 1.0 90 < th dose dependent rect. 3 17
13 75.31 temperature 10.0 90 > th dose dependent rect. 20 19
17 75.38 temperature 15.0 270 > th dose independent rect. 20 16
20 75.52 atmosphere 1010.0 90 < th dose independent rect. 20 7
28 75.73 temperature 15.0 30 > th dose independent rect. 20 20
32 75.76 temperature 10.0 30 > th dose dependent rect. 6 21
35 75.80 temperature 20.0 270 > th dose independent rect. 20 5
36 75.80 temperature 30.0 90 < th dose dependent rect. 3 15
45 75.94 radiation 20.0 14400 < th dose dependent rect. 21 7
48 75.96 radiation 40.0 90 < th dose independent rect. 3 17
52 75.99 humidity 60.0 10 > th dose independent rect. 3 17
60 76.10 atmosphere 1015.0 90 < th dose dependent rect. 15 5
70 76.18 atmosphere 1010.0 10 < th dose independent rect. 3 6
71 76.19 humidity 90.0 270 < th dose independent rect. 6 9
72 76.19 atmosphere 1015.0 270 < th dose dependent rect. 13 7
77 76.22 radiation 40.0 270 < th dose dependent rect. 1 9
85 76.26 temperature 10.0 90 > th dose dependent rect. 9 18
98 76.34 wind 9.0 90 < th dose independent rect. 20 7
100 76.34 temperature 30.0 90 < th dose independent rect. 20 7
101 76.34 humidity 50.0 90 > th dose independent rect. 20 7
104 76.34 atmosphere 995.0 90 > th dose independent rect. 20 7
105 76.34 radiation 1.0 90 < th dose independent rect. 20 7
110 76.34 temperature 10.0 90 > th dose independent rect. 3 17
111 76.34 atmosphere 1015.0 90 < th dose independent rect. 3 17
112 76.34 radiation 1.0 90 < th dose dependent rect. 20 7
119 76.36 humidity 70.0 90 > th dose independent rect. 3 10
120 76.36 atmosphere 1015.0 270 < th dose dependent rect. 16 1
121 76.37 wind 5.0 270 > th dose independent rect. 16 2
124 76.38 precipitation 0.1 90 < th dose independent rect. 3 17
125 76.38 precipitation 0.1 90 < th dose dependent rect. 3 17
128 76.40 precipitation 0.1 90 < th dose independent rect. 20 7
129 76.40 precipitation 0.1 90 < th dose dependent rect. 20 7
135 76.43 wind 5.0 90 < th dose independent rect. 11 16
137 76.43 temperature 15.0 30 > th dose independent rect. 6 21
140 76.44 wind 5.0 90 < th dose independent rect. 9 18
142 76.45 humidity 50.0 90 > th dose dependent rect. 3 10
159 76.53 atmosphere 1015.0 10 < th dose dependent rect. 16 5
160 76.53 radiation 30.0 270 < th dose dependent rect. 1 16
168 76.56 temperature 15.0 270 > th dose independent rect. 6 19
170 76.56 humidity 60.0 90 > th dose dependent rect. 3 15
176 76.58 humidity 50.0 90 > th dose dependent rect. 3 17
190 76.61 atmosphere 995.0 270 > th dose independent rect. 17 23
199 76.66 wind 1.0 270 > th dose independent rect. 12 8
202 76.67 radiation 20.0 270 < th dose independent rect. 1 8
221 76.70 temperature 30.0 90 < th dose dependent rect. 3 9
228 76.74 atmosphere 995.0 10 > th dose independent rect. 6 10
234 76.75 wind 9.0 90 < th dose independent rect. 3 17
268 76.85 radiation 40.0 90 < th dose independent rect. 3 8
272 76.86 radiation 40.0 270 < th dose dependent rect. 15 2
274 76.86 radiation 40.0 90 < th dose dependent rect. 3 17
276 76.87 radiation 30.0 270 < th dose independent rect. 15 2
278 76.87 temperature 10.0 1440 > th dose independent rect. 21 7
281 76.87 temperature 30.0 1440 < th dose independent rect. 21 7
285 76.87 humidity 50.0 1440 > th dose independent rect. 21 7
291 76.87 atmosphere 995.0 1440 > th dose independent rect. 21 7
292 76.87 radiation 1.0 1440 < th dose independent rect. 21 7
315 76.87 temperature 10.0 1440 > th dose independent rect. 4 17
321 76.88 radiation 10.0 270 < th dose independent rect. 1 16
323 76.88 radiation 30.0 1440 < th dose dependent rect. 21 7
333 76.90 humidity 50.0 90 > th dose dependent rect. 20 7
338 76.92 atmosphere 1015.0 270 < th dose independent rect. 20 16
350 76.95 wind 1.0 90 > th dose independent rect. 20 7
367 76.99 radiation 40.0 90 < th dose independent rect. 15 5
369 76.99 atmosphere 995.0 270 > th dose independent rect. 5 10
389 77.03 precipitation 0.1 30 < th dose independent rect. 16 14
390 77.03 atmosphere 1015.0 90 < th dose independent rect. 20 19
395 77.03 precipitation 0.1 30 < th dose dependent rect. 16 14
397 77.04 wind 5.0 270 < th dose independent rect. 9 16
402 77.04 atmosphere 995.0 30 > th dose independent rect. 20 20
405 77.04 temperature 10.0 90 > th dose dependent rect. 6 9
411 77.05 radiation 40.0 270 < th dose independent rect. 1 16
417 77.06 wind 9.0 270 < th dose independent rect. 20 16
418 77.06 temperature 15.0 270 > th dose independent rect. 9 16
422 77.07 radiation 40.0 270 < th dose independent rect. 14 15
466 77.11 radiation 30.0 10 < th dose independent rect. 16 14
467 77.11 wind 9.0 90 < th dose independent rect. 20 19
475 77.12 humidity 50.0 270 > th dose independent rect. 1 17
483 77.13 temperature 10.0 10 > th dose independent rect. 6 10
485 77.13 atmosphere 1015.0 10 < th dose independent rect. 6 10
486 77.13 precipitation 0.1 10 < th dose independent rect. 6 10
487 77.13 temperature 10.0 10 > th dose independent rect. 16 14
493 77.13 precipitation 0.1 10 < th dose dependent rect. 6 10
501 77.14 wind 9.0 270 < th dose independent rect. 5 10
503 77.15 radiation 1.0 90 > th dose independent sin 1 NA
504 77.15 temperature 10.0 270 > th dose independent rect. 12 8
505 77.15 atmosphere 1015.0 270 < th dose independent rect. 12 8
507 77.15 atmosphere 995.0 270 > th dose independent rect. 20 16
510 77.16 temperature 10.0 90 > th dose independent rect. 15 5
512 77.16 atmosphere 1010.0 90 < th dose independent rect. 15 5
519 77.17 humidity 50.0 270 > th dose dependent rect. 18 7
525 77.18 humidity 60.0 30 > th dose independent rect. 16 4
526 77.18 wind 1.0 90 > th dose independent rect. 15 5
528 77.18 precipitation 0.1 270 < th dose independent rect. 5 10
529 77.18 precipitation 0.1 270 < th dose dependent rect. 5 10
543 77.19 wind 9.0 10 < th dose independent rect. 6 10
544 77.19 precipitation 0.1 270 < th dose independent rect. 20 16
557 77.19 precipitation 0.1 270 < th dose dependent rect. 20 16
564 77.20 temperature 15.0 90 > th dose independent rect. 9 18
566 77.20 precipitation 0.1 270 < th dose independent rect. 17 23
571 77.20 precipitation 0.1 270 < th dose dependent rect. 17 23
586 77.22 temperature 10.0 270 > th dose independent rect. 5 10
587 77.22 atmosphere 1015.0 270 < th dose independent rect. 5 10
589 77.22 temperature 10.0 270 > th dose independent rect. 15 14
600 77.23 wind 5.0 270 < th dose independent rect. 17 8
602 77.23 precipitation 0.1 90 < th dose independent rect. 20 19
607 77.23 precipitation 0.1 90 < th dose dependent rect. 20 19
608 77.23 radiation 10.0 270 < th dose dependent rect. 24 20
622 77.25 wind 9.0 270 < th dose independent rect. 17 23
630 77.26 precipitation 0.1 30 < th dose independent rect. 16 4
635 77.26 precipitation 0.1 30 < th dose dependent rect. 16 4
649 77.28 wind 9.0 30 < th dose independent rect. 16 14
661 77.29 wind 1.0 90 > th dose dependent rect. 15 5
663 77.29 wind 1.0 270 > th dose dependent rect. 12 8
667 77.30 precipitation 0.1 270 < th dose independent rect. 12 8
670 77.30 precipitation 0.1 270 < th dose dependent rect. 12 8
683 77.32 wind 1.0 10 > th dose independent rect. 16 4
684 77.32 wind 9.0 30 < th dose independent rect. 16 4
690 77.32 humidity 50.0 270 > th dose independent rect. 20 16
699 77.33 wind 1.0 270 > th dose independent rect. 16 1
703 77.33 atmosphere 995.0 270 > th dose independent rect. 6 19
706 77.33 temperature 30.0 90 < th dose dependent rect. 3 12
733 77.36 humidity 50.0 90 > th dose independent rect. 20 19
736 77.36 radiation 1.0 270 < th dose dependent rect. 18 7
741 77.37 temperature 10.0 270 > th dose independent rect. 16 1
743 77.37 atmosphere 1010.0 270 < th dose independent rect. 16 1
753 77.37 temperature 10.0 270 > th dose independent rect. 17 23
756 77.37 humidity 50.0 270 > th dose dependent rect. 1 10
758 77.37 humidity 50.0 270 > th dose dependent rect. 1 16
771 77.39 humidity 70.0 270 > th dose independent rect. 18 7
799 77.42 wind 1.0 270 > th dose dependent rect. 16 1
816 77.44 temperature 25.0 90 < th dose independent rect. 3 15
830 77.46 wind 9.0 270 < th dose independent rect. 12 8
831 77.46 wind 1.0 30 > th dose independent rect. 6 10
858 77.47 wind 5.0 270 < th dose independent rect. 6 19
870 77.48 temperature 30.0 10 < th dose independent rect. 16 4
885 77.49 radiation 10.0 270 < th dose independent rect. 24 20
886 77.49 temperature 25.0 30 > th dose dependent rect. 9 3
894 77.50 radiation 1.0 90 < th dose dependent sin 1 NA
895 77.50 radiation 40.0 90 < th dose dependent rect. 3 8
911 77.52 precipitation 0.1 270 < th dose independent rect. 16 1
916 77.52 humidity 60.0 30 > th dose independent rect. 16 14
921 77.52 precipitation 0.1 270 < th dose dependent rect. 16 1
922 77.52 humidity 60.0 90 > th dose dependent rect. 3 12
926 77.53 atmosphere 995.0 30 > th dose independent rect. 16 4
936 77.53 wind 9.0 90 < th dose dependent rect. 20 7
940 77.54 radiation 1.0 90 < th dose independent sin 1 NA
959 77.56 humidity 50.0 270 > th dose independent rect. 12 8
974 77.57 radiation 1.0 270 < th dose independent rect. 18 7
992 77.59 atmosphere 995.0 90 > th dose independent rect. 3 17
994 77.59 atmosphere 1015.0 270 < th dose independent rect. 6 19
998 77.59 wind 9.0 270 < th dose dependent rect. 17 8
1000 77.60 wind 9.0 270 < th dose independent rect. 16 1