Os01g0230200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os01g0230200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.72 | 0.331 | 9.27 | 1.09 | 0.334 | -2.02 | 0.926 | 1.29 | 0.372 | 5.32 | 17.5 | 224 | -- | -- |
| 51 | 0.333 | 9.3 | 0.907 | 0.331 | -2.02 | 0.531 | -- | 0.357 | 4.68 | 17.06 | 236 | -- | -- |
| 50.8 | 0.332 | 9.29 | 0.957 | 0.371 | -2.01 | -- | 0.589 | 0.333 | 3.69 | 17.21 | 288 | -- | -- |
| 50.93 | 0.332 | 9.31 | 0.873 | 0.366 | -2.03 | -- | -- | 0.308 | 3.51 | 16.8 | 289 | -- | -- |
| 55.38 | 0.347 | 9.27 | 1.1 | -- | -2.31 | -- | 0.809 | 0.409 | -- | 17.4 | 240 | -- | -- |
| 103.43 | 0.477 | 9.37 | 0.407 | 1.01 | -- | 0.828 | -- | -0.0103 | 4.52 | -- | -- | -- | -- |
| 105.19 | 0.48 | 9.37 | 0.401 | 1.01 | -- | -- | -- | -0.0147 | 4.39 | -- | -- | -- | -- |
| 55.57 | 0.347 | 9.3 | 0.961 | -- | -2.32 | -- | -- | 0.368 | -- | 17.2 | 244 | -- | -- |
| 68.85 | 0.386 | 9.33 | -- | 0.482 | -1.55 | -- | -- | 0.167 | 3.67 | 18.5 | 289 | -- | -- |
| 160.07 | 0.591 | 9.38 | 0.441 | -- | -- | -- | -- | 0.0121 | -- | -- | -- | -- | -- |
| 109.43 | 0.489 | 9.38 | -- | 1.02 | -- | -- | -- | -0.0594 | 4.38 | -- | -- | -- | -- |
| 77.51 | 0.41 | 9.33 | -- | -- | -1.91 | -- | -- | 0.228 | -- | 18.84 | 229 | -- | -- |
| 165.2 | 0.6 | 9.39 | -- | -- | -- | -- | -- | -0.0369 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 2 | 49.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 49.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 9 | 49.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 13 | 50.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 16 | 50.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 26 | 50.78 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 35 | 50.94 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 36 | 50.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 52 | 51.52 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 56 | 51.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 72 | 52.00 | temperature | 15 | 720 | > th | dose dependent | sin | 9 | NA |
| 74 | 52.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 252 | 54.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 255 | 54.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 256 | 54.46 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 257 | 54.46 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 259 | 54.49 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 311 | 54.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 11 |
| 327 | 54.69 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 335 | 54.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 16 |
| 409 | 54.94 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 482 | 55.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 597 | 55.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 669 | 55.67 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |