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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0565900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helix-loop-helix DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.34 (0.0345) R2 : 0.759
β1 : -1.16 (0.129) R2dD : 0.0468 R2D : 0.0579
β2 : 1.14 (0.105) R2dC : 0.0852 R2C : 0.247
β3 : -3.1 (0.142) R2dE : 0.365 R2E : 0.603
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.606 (0.0752) R2dN8 : 0.0483 R2N8 : 0.0504
σ : 0.643
deviance : 190.79
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_____
C
peak time of C : 5.97
E
wheather : temperature
threshold : 21.26
memory length : 38
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.75
open length of G : 20.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
190.6 0.649 6.34 -1.16 1.13 -3.11 -0.28 -0.0133 -0.607 5.99 21.26 38 8.76 20.2
190.6 0.643 6.34 -1.16 1.14 -3.11 -0.277 -- -0.606 5.99 21.28 38 8.76 20.2
190.77 0.643 6.34 -1.14 1.14 -3.11 -- 0.137 -0.601 5.98 21.27 38 8.76 20.2
190.79 0.643 6.34 -1.16 1.14 -3.1 -- -- -0.606 5.97 21.26 38 8.75 20.2
226.51 0.701 6.36 -0.807 -- -3.69 -- 1.23 -0.55 -- 19.38 72 9.17 19.2
352.64 0.88 6.41 -1.77 2.46 -- 0.716 -- -0.961 4.76 -- -- -- --
353.98 0.881 6.41 -1.78 2.46 -- -- -- -0.965 4.78 -- -- -- --
211.12 0.677 6.3 -0.947 -- -3.78 -- -- -0.522 -- 17.81 166 7.83 19.2
224.13 0.697 6.3 -- 1.02 -3.41 -- -- -0.443 6.28 21.24 40 8.7 20.5
675.21 1.21 6.43 -1.69 -- -- -- -- -0.901 -- -- -- -- --
437.28 0.978 6.36 -- 2.43 -- -- -- -0.767 4.8 -- -- -- --
233.51 0.712 6.32 -- -- -4.03 -- -- -0.404 -- 18 167 7.7 19.5
750.13 1.28 6.39 -- -- -- -- -- -0.714 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.17 temperature 20 30 > th dose dependent rect. 9 20
49 213.77 temperature 20 90 > th dose dependent rect. 19 23
53 214.66 temperature 20 90 > th dose dependent no NA NA
58 215.29 temperature 30 90 < th dose dependent rect. 3 23
80 218.58 temperature 20 90 > th dose dependent rect. 22 23
92 219.70 temperature 20 10 > th dose dependent sin 21 NA
96 219.95 temperature 20 90 > th dose dependent rect. 24 23
114 221.51 temperature 10 10 > th dose dependent sin 21 NA
132 222.71 temperature 20 30 > th dose dependent rect. 2 23
134 222.88 temperature 30 90 < th dose dependent rect. 5 18
146 223.47 temperature 30 10 < th dose dependent sin 21 NA
178 225.65 temperature 20 10 > th dose dependent rect. 9 14
180 225.70 temperature 30 270 < th dose dependent rect. 1 22
202 227.05 temperature 30 270 < th dose dependent rect. 3 19
230 228.32 temperature 30 10 < th dose dependent rect. 5 19
249 228.69 temperature 25 10 > th dose dependent rect. 9 12
250 228.71 temperature 30 90 < th dose dependent no NA NA
269 229.34 temperature 30 90 < th dose dependent rect. 13 23
311 230.55 temperature 30 90 < th dose dependent rect. 15 23
355 232.05 temperature 30 90 < th dose dependent rect. 17 23
360 232.12 temperature 20 30 > th dose dependent rect. 11 23
385 232.71 temperature 30 90 < th dose dependent rect. 5 16
387 232.77 temperature 30 30 < th dose dependent rect. 11 23
419 233.49 temperature 30 90 < th dose dependent rect. 21 23
420 233.51 temperature 30 30 < th dose dependent rect. 23 23
434 234.00 temperature 25 270 < th dose independent rect. 3 20
500 235.62 temperature 25 270 > th dose independent rect. 7 20
503 235.69 temperature 30 90 < th dose dependent rect. 9 23
635 238.63 temperature 20 10 > th dose dependent rect. 17 23
652 238.88 temperature 30 30 < th dose dependent rect. 19 23
671 239.13 temperature 20 90 > th dose dependent rect. 13 23
734 240.09 temperature 30 10 < th dose dependent rect. 6 14
849 241.66 temperature 25 270 > th dose independent rect. 22 23
880 242.30 temperature 25 270 > th dose independent rect. 19 23
900 242.76 temperature 30 10 < th dose dependent rect. 6 16
932 243.33 temperature 25 270 < th dose independent no NA NA
988 244.11 temperature 25 270 < th dose independent rect. 13 23