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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0759700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ER33 protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.05 (0.0441) R2 : 0.371
β1 : -1.84 (0.215) R2dD : 0.229 R2D : -0.208
β2 : 1.25 (0.0968) R2dC : 0.241 R2C : 0.164
β3 : 0.337 (0.168) R2dE : 0.0072 R2E : -0.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.75 (0.808) R2dD*E : 0.211 R2D*E : -0.14
γ1 : -0.757 (0.0989) R2dN8 : 0.148 R2N8 : -0.026
σ : 0.742
deviance : 253.98
__
_____
C
peak time of C : 0.78
E
wheather : temperature
threshold : 18.39
memory length : 329
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.87 0.746 5.06 -1.93 1.2 0.608 1.7 -6.4 -0.82 1.18 19.02 624 -- --
277.83 0.776 4.92 -0.835 1.2 0.754 1.25 -- -0.542 1.03 5.762 5210 -- --
253.98 0.742 5.05 -1.84 1.25 0.337 -- -6.75 -0.757 0.78 18.39 329 -- --
283.76 0.785 4.93 -0.916 1.19 0.773 -- -- -0.553 0.723 5.59 5289 -- --
330.2 0.851 4.91 -0.905 -- -1.01 -- -4.65 -0.409 -- 24.3 104 -- --
287.52 0.795 4.89 -0.511 1.23 -- 1.26 -- -0.394 1.02 -- -- -- --
293.69 0.803 4.9 -0.554 1.23 -- -- -- -0.399 0.716 -- -- -- --
341.53 0.864 4.85 -0.324 -- -1.38 -- -- -0.261 -- 24.7 71 -- --
300.18 0.807 4.89 -- 1.2 0.267 -- -- -0.376 0.696 -10.81 5238 -- --
388.36 0.921 4.88 -0.51 -- -- -- -- -0.377 -- -- -- -- --
301.79 0.813 4.88 -- 1.22 -- -- -- -0.337 0.695 -- -- -- --
343.48 0.866 4.85 -- -- -1.48 -- -- -0.264 -- 25.42 16 -- --
395.22 0.928 4.86 -- -- -- -- -- -0.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 237.96 humidity 90.0 720 < th dose independent rect. 16 8
2 238.60 humidity 90.0 720 < th dose independent rect. 10 14
15 241.84 radiation 20.0 14400 < th dose independent rect. 20 10
29 244.46 humidity 90.0 720 < th dose independent sin 18 NA
33 244.60 wind 7.0 720 < th dose independent rect. 5 12
35 244.69 precipitation 0.1 720 < th dose independent rect. 8 21
36 244.69 precipitation 0.1 720 < th dose dependent rect. 8 21
37 244.75 precipitation 0.1 720 < th dose independent rect. 17 20
38 244.75 precipitation 0.1 720 < th dose dependent rect. 17 20
40 244.92 precipitation 0.1 720 < th dose independent rect. 18 10
41 244.92 precipitation 0.1 720 < th dose dependent rect. 18 10
53 245.77 precipitation 0.1 720 < th dose independent rect. 18 17
54 245.77 precipitation 0.1 720 < th dose dependent rect. 18 17
56 245.90 precipitation 0.1 720 < th dose independent rect. 8 14
57 245.90 precipitation 0.1 720 < th dose dependent rect. 8 14
58 245.95 humidity 60.0 720 > th dose dependent rect. 19 6
59 245.99 wind 7.0 720 < th dose independent rect. 20 21
68 246.40 precipitation 0.1 720 < th dose independent rect. 17 12
70 246.40 precipitation 0.1 720 < th dose dependent rect. 17 12
79 246.58 radiation 1.0 4320 > th dose independent rect. 16 1
84 246.66 radiation 1.0 4320 < th dose independent rect. 16 1
89 246.73 temperature 20.0 720 > th dose dependent rect. 5 11
95 246.88 humidity 80.0 720 > th dose dependent rect. 14 10
107 247.06 wind 7.0 720 < th dose independent rect. 5 18
113 247.10 humidity 80.0 720 > th dose independent rect. 15 10
121 247.15 humidity 80.0 720 > th dose independent rect. 14 13
129 247.27 precipitation 0.1 720 < th dose independent rect. 16 14
131 247.27 precipitation 0.1 720 < th dose dependent rect. 16 14
136 247.35 humidity 80.0 720 > th dose independent rect. 14 17
149 247.56 humidity 80.0 720 > th dose independent rect. 12 19
150 247.59 humidity 70.0 720 > th dose dependent rect. 17 7
156 247.68 humidity 80.0 720 > th dose independent sin 15 NA
159 247.71 humidity 80.0 720 > th dose dependent rect. 12 12
166 247.81 wind 7.0 720 < th dose independent rect. 6 10
196 248.22 wind 7.0 720 < th dose independent rect. 5 20
197 248.22 temperature 20.0 720 > th dose dependent sin 2 NA
222 248.48 humidity 70.0 720 > th dose dependent rect. 14 17
238 248.66 humidity 70.0 720 > th dose dependent sin 15 NA
247 248.77 temperature 20.0 720 > th dose independent rect. 6 18
267 248.92 humidity 70.0 720 > th dose dependent rect. 14 13
273 248.97 wind 7.0 720 < th dose independent rect. 11 6
359 249.69 temperature 25.0 720 > th dose independent rect. 6 10
378 249.80 temperature 25.0 720 > th dose independent rect. 4 12
406 249.95 radiation 1.0 4320 < th dose dependent rect. 16 1
429 250.11 radiation 1.0 4320 > th dose independent rect. 12 5
441 250.20 radiation 40.0 720 < th dose independent rect. 17 18
447 250.23 radiation 1.0 4320 > th dose independent rect. 8 9
501 250.48 radiation 1.0 4320 < th dose independent rect. 8 9
523 250.60 temperature 20.0 720 > th dose independent rect. 13 4
606 251.07 temperature 10.0 90 > th dose dependent rect. 5 14
633 251.25 temperature 25.0 720 > th dose independent sin 3 NA
688 251.60 wind 7.0 720 < th dose dependent rect. 5 3
751 251.99 precipitation 0.1 720 < th dose independent rect. 15 8
753 251.99 precipitation 0.1 720 < th dose dependent rect. 15 8
766 252.05 precipitation 0.1 720 < th dose independent rect. 14 15
767 252.05 precipitation 0.1 720 < th dose dependent rect. 14 15
777 252.11 wind 9.0 720 < th dose dependent rect. 5 12
801 252.21 precipitation 0.1 720 < th dose independent rect. 10 10
802 252.21 precipitation 0.1 720 < th dose dependent rect. 10 10
834 252.36 precipitation 0.1 720 < th dose independent rect. 15 23
837 252.36 precipitation 0.1 720 < th dose dependent rect. 15 23
851 252.45 radiation 1.0 720 > th dose independent rect. 9 10
866 252.47 temperature 20.0 720 > th dose dependent rect. 7 4
902 252.64 temperature 30.0 270 < th dose dependent rect. 12 22
908 252.66 temperature 30.0 720 < th dose dependent rect. 12 20
918 252.71 precipitation 0.1 720 < th dose independent rect. 17 4
920 252.71 precipitation 0.1 720 < th dose dependent rect. 17 4
927 252.76 temperature 25.0 720 < th dose independent rect. 23 16
938 252.81 temperature 25.0 720 < th dose independent sin 5 NA
955 252.90 precipitation 0.1 720 < th dose independent sin 13 NA
957 252.90 precipitation 0.1 720 < th dose dependent sin 13 NA
962 252.93 temperature 20.0 720 > th dose dependent no NA NA
978 253.01 temperature 20.0 270 > th dose dependent rect. 12 23
987 253.07 humidity 90.0 720 > th dose independent rect. 21 3