BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0759700 Os03g0759700|AK072833
(317 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0759700 Similar to ER33 protein (Fragment) 356 1e-98
AK064057 151 6e-37
Os01g0105700 Helix-loop-helix DNA-binding domain containing... 97 2e-20
Os01g0784900 Basic helix-loop-helix dimerisation region bHL... 94 9e-20
Os07g0471900 Helix-loop-helix DNA-binding domain containing... 92 5e-19
Os02g0276900 Helix-loop-helix DNA-binding domain containing... 91 8e-19
Os02g0671300 Helix-loop-helix DNA-binding domain containing... 89 4e-18
Os08g0179400 Helix-loop-helix DNA-binding domain containing... 88 7e-18
Os04g0631600 Basic helix-loop-helix dimerisation region bHL... 88 9e-18
Os01g0230200 Helix-loop-helix DNA-binding domain containing... 87 1e-17
Os05g0501200 Basic helix-loop-helix dimerisation region bHL... 87 2e-17
Os04g0493100 Basic helix-loop-helix dimerisation region bHL... 86 3e-17
Os05g0228400 Helix-loop-helix DNA-binding domain containing... 82 6e-16
Os04g0565900 Helix-loop-helix DNA-binding domain containing... 80 1e-15
>Os03g0759700 Similar to ER33 protein (Fragment)
Length = 317
Score = 356 bits (914), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 193/317 (60%), Positives = 193/317 (60%)
Query: 1 MVKEEEIITEAAGARGYMEMLGLGEEAADYLMCLXXXXXXXXXXXXXXXXXXXXXXXXYL 60
MVKEEEIITEAAGARGYMEMLGLGEEAADYLMCL YL
Sbjct: 1 MVKEEEIITEAAGARGYMEMLGLGEEAADYLMCLSPSSYLSSPAASTTTAVASPTCASYL 60
Query: 61 APHPYHHLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQKXXXXXXXXXXXXXXXXXXX 120
APHPYHHLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQK
Sbjct: 61 APHPYHHLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQKSSPTTECSSSVSSMSSSPT 120
Query: 121 XXXXXXXXXXXFKKKGSRGCDQRKXXXXXXXXXXNKXXXXXXXXXXXXIIALQQLVSPFG 180
FKKKGSRGCDQRK NK IIALQQLVSPFG
Sbjct: 121 ATAISSSKSPAFKKKGSRGCDQRKATAPAAATTTNKRPRVRRERLGERIIALQQLVSPFG 180
Query: 181 KSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSD 240
KSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSD
Sbjct: 181 KSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSD 240
Query: 241 LRSRGLCLVPISCTEHVXXXXXXXXXXXXXDLWSXXXXXXXXXXXXXXXXXXXXXXXXXX 300
LRSRGLCLVPISCTEHV DLWS
Sbjct: 241 LRSRGLCLVPISCTEHVAGAGAGTGHGNGADLWSVAAGMAKATATVTAAVERSKEAAAAA 300
Query: 301 XXXXXXXXXDRPGQQLA 317
DRPGQQLA
Sbjct: 301 AATAALLRADRPGQQLA 317
>AK064057
Length = 239
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 76/90 (84%)
Query: 185 ASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSDLRSR 244
ASVLHE LGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSDLRSR
Sbjct: 108 ASVLHEELGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPAAEEQPPALRPSDLRSR 167
Query: 245 GLCLVPISCTEHVXXXXXXXXXXXXXDLWS 274
GLCLVPISCTEHV DLWS
Sbjct: 168 GLCLVPISCTEHVAGAGAGTGHGNGADLWS 197
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/38 (100%), Positives = 38/38 (100%)
Query: 64 PYHHLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQK 101
PYHHLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQK
Sbjct: 41 PYHHLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQK 78
>Os01g0105700 Helix-loop-helix DNA-binding domain containing protein
Length = 388
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 65/94 (69%), Gaps = 8/94 (8%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVP-----EQE 223
I ALQQLVSPFGK+DTASVL EA+GYI+FL DQV+ LS PYL+ S ++ +Q
Sbjct: 283 IAALQQLVSPFGKTDTASVLMEAIGYIKFLQDQVETLSGPYLRSSKNSKKLACRAAQQQR 342
Query: 224 RGTPAAEEQPPALRPSDLRSRGLCLVPISCTEHV 257
+GT + L DLRSRGLCLVP+SCT +V
Sbjct: 343 KGTSNGGDAAAKL---DLRSRGLCLVPLSCTSYV 373
>Os01g0784900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 392
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 63/89 (70%), Gaps = 4/89 (4%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
I ALQQLVSPFGK+DTASVLHEA+ YI+FLH+QV LSSPYL+ P ++ +
Sbjct: 290 ITALQQLVSPFGKTDTASVLHEAIEYIKFLHEQVASLSSPYLKNGNPLQHFQQKGSESTK 349
Query: 229 AEEQPPALRPSDLRSRGLCLVPISCTEHV 257
EQP +P DLRSRGLCLVP++ T V
Sbjct: 350 DAEQP---KP-DLRSRGLCLVPVASTYTV 374
>Os07g0471900 Helix-loop-helix DNA-binding domain containing protein
Length = 436
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/89 (51%), Positives = 61/89 (68%), Gaps = 5/89 (5%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
I ALQQ+VSPFGK+DTASVL+EA+ YI++LH+QVQ+LS PY++ + +
Sbjct: 333 ITALQQIVSPFGKTDTASVLYEAINYIKWLHEQVQLLSDPYMK-----SSSSKDYNAWGG 387
Query: 229 AEEQPPALRPSDLRSRGLCLVPISCTEHV 257
+ + A DLRSRGLCLVP+SCT V
Sbjct: 388 LDRKEKADAEVDLRSRGLCLVPVSCTPQV 416
>Os02g0276900 Helix-loop-helix DNA-binding domain containing protein
Length = 412
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 69/129 (53%), Gaps = 40/129 (31%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPY------------------- 209
I AL QLVSPFGK+DTASVL EA+GYIRFLH Q++ LSSPY
Sbjct: 262 ITALHQLVSPFGKTDTASVLLEAIGYIRFLHGQIEALSSPYLGNGGSSSNGGGGGGGGSN 321
Query: 210 --LQRLPPSARV--------PE-----------QERGTPAAEEQPPALRPSDLRSRGLCL 248
LQ P ++RV PE ++RG P +E + DLRSRGLCL
Sbjct: 322 SKLQHQPEASRVQGERNSIFPEDPGQLLHDNAVKKRGQPDQDESCEEAKTMDLRSRGLCL 381
Query: 249 VPISCTEHV 257
VP+SCT V
Sbjct: 382 VPVSCTVDV 390
>Os02g0671300 Helix-loop-helix DNA-binding domain containing protein
Length = 497
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTP- 227
I ALQQ+VSPFGK+DTASVL E + YI+FLH+QVQ+LS PY S+R +Q P
Sbjct: 390 ITALQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYTN----SSRSNKQGNSVPW 445
Query: 228 --AAEEQPPALRPSDLRSRGLCLVPISCTEHV 257
AE DLR+RGLCLVP+S T V
Sbjct: 446 GDQAEASKGETMEHDLRNRGLCLVPVSWTPEV 477
>Os08g0179400 Helix-loop-helix DNA-binding domain containing protein
Length = 467
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYL---QRLPPSARVPEQERG 225
+ ALQQLVSPFGK+DTASVLHE + YI+FLHDQV LS+PYL Q++P +
Sbjct: 359 VTALQQLVSPFGKTDTASVLHETIEYIKFLHDQVGALSAPYLKNRQQVPHLKNSTGVDND 418
Query: 226 TPAAEEQPPALRPSDLRSRGLCLVPISCTEHV 257
+ A DL RGLCLVPIS T V
Sbjct: 419 GGGGGGEATAASKRDLTGRGLCLVPISSTFAV 450
>Os04g0631600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 437
Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
I ALQQLVSPFGK+DTASVLHE + YI+FLHDQV LS+PYL+ + +VP + +P
Sbjct: 337 ITALQQLVSPFGKTDTASVLHETIEYIKFLHDQVGALSAPYLKN--GAHQVPHLKNSSPD 394
Query: 229 AEEQPPALRPSDLRSRGLCLVPISCT 254
+ L+ RGLCLVPIS T
Sbjct: 395 KSKHGEI----SLKGRGLCLVPISST 416
>Os01g0230200 Helix-loop-helix DNA-binding domain containing protein
Length = 406
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/109 (46%), Positives = 61/109 (55%), Gaps = 21/109 (19%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
I AL Q+VSPFGK+DTASVL E +GYIRFL Q++ LS PYL + SA +Q+ G A
Sbjct: 266 ITALHQIVSPFGKTDTASVLQETIGYIRFLLGQIEALSYPYLGQC-CSANPMQQQTGIMA 324
Query: 229 AEEQPPALRP--------------------SDLRSRGLCLVPISCTEHV 257
E L P DLRSRGLCLVP+SC H+
Sbjct: 325 GERSTDGLFPEFPAGQDAEKDGKKQQAKKDDDLRSRGLCLVPVSCMPHL 373
>Os05g0501200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 323
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 59/89 (66%), Gaps = 3/89 (3%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
I ALQQLVSPFGK+DTASVLHEA+ YI+FLHDQV LSSPYL+ P +Q
Sbjct: 220 ITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVASLSSPYLRCGRPVQLQHQQGSHKVN 279
Query: 229 AEEQPPALRPSDLRSRGLCLVPISCTEHV 257
+ L DLRSRGLCLVP++ T V
Sbjct: 280 GNCEGKQL---DLRSRGLCLVPVASTYTV 305
>Os04g0493100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 156
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 59/86 (68%), Gaps = 13/86 (15%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
+ ALQQLVSPFGK+DTASVL EA GYI+FLH Q++VLSSPY+ R PP VP A
Sbjct: 63 VAALQQLVSPFGKTDTASVLQEASGYIKFLHQQLEVLSSPYM-RAPP---VPG------A 112
Query: 229 AEEQPPALRPSDLRSRGLCLVPISCT 254
A E P LR+RGLCLVP+ T
Sbjct: 113 APEDPDHY---SLRNRGLCLVPVDQT 135
>Os05g0228400 Helix-loop-helix DNA-binding domain containing protein
Length = 268
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 57/115 (49%), Gaps = 27/115 (23%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYL---QRLPPSARVPEQERG 225
I AL Q+VSPFGK+DTASVL E +GYIRFL Q++ LS PY+ P P ER
Sbjct: 134 ITALHQIVSPFGKTDTASVLQETIGYIRFLLSQIEALSYPYMGDANGTGPMQNGPVGERN 193
Query: 226 TPAAEEQPPAL------------------------RPSDLRSRGLCLVPISCTEH 256
E P L DLRSRGLCLVP+SCT H
Sbjct: 194 PGLFPEYPGQLLNHNGNTGAQQPAAQPEQQGANDDGKKDLRSRGLCLVPVSCTSH 248
>Os04g0565900 Helix-loop-helix DNA-binding domain containing protein
Length = 418
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 6/86 (6%)
Query: 169 IIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPPSARVPEQERGTPA 228
I ALQQ+VSPFGK+DTASVL E + YI+FLH+Q+Q+ S PY+ +
Sbjct: 316 ITALQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNSTNKGHIHW------G 369
Query: 229 AEEQPPALRPSDLRSRGLCLVPISCT 254
E + A DLR RGLCLVP+S T
Sbjct: 370 GEGKRKAGLEHDLRGRGLCLVPVSWT 395
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,278,741
Number of extensions: 235284
Number of successful extensions: 981
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 15
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)