Os02g0671300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os02g0671300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 281.39 | 0.788 | 5.12 | -2.32 | 3.39 | 2.9 | -3.52 | 5.13 | -0.378 | 7.15 | 20.64 | 300 | 0.717 | 6.87 |
| 291.63 | 0.795 | 5.2 | -2.67 | 3.18 | 3.16 | -2.62 | -- | -0.502 | 6.88 | 20.45 | 304 | 0.6 | 7.7 |
| 307.34 | 0.817 | 5.15 | -2.75 | 3.41 | 3.04 | -- | 2.31 | -0.489 | 7.07 | 20.12 | 354 | 0.0961 | 7.43 |
| 301.71 | 0.809 | 5.19 | -3.05 | 3.07 | 3.07 | -- | -- | -0.574 | 6.95 | 19.81 | 322 | 0.133 | 8.18 |
| 349.39 | 0.871 | 5.2 | -2.83 | -- | 4.87 | -- | -0.0108 | -0.277 | -- | -4.163 | 312 | 0.0167 | 9.07 |
| 419.78 | 0.961 | 5.03 | -2.69 | 4.97 | -- | -2.1 | -- | -0.0902 | 6.9 | -- | -- | -- | -- |
| 431.13 | 0.972 | 5.03 | -2.73 | 4.97 | -- | -- | -- | -0.0848 | 6.9 | -- | -- | -- | -- |
| 327.84 | 0.843 | 5.27 | -3.13 | -- | 5.16 | -- | -- | -0.598 | -- | 9.996 | 311 | 0.00339 | 8.97 |
| 541.47 | 1.08 | 5.07 | -- | 3.43 | 2.45 | -- | -- | -0.127 | 7.02 | 19.81 | 312 | 0.295 | 7.91 |
| 1724.83 | 1.94 | 5.13 | -2.62 | -- | -- | -- | -- | 0.0091 | -- | -- | -- | -- | -- |
| 626.97 | 1.17 | 4.96 | -- | 4.94 | -- | -- | -- | 0.219 | 6.93 | -- | -- | -- | -- |
| 576.4 | 1.12 | 5.16 | -- | -- | 4.78 | -- | -- | -0.105 | -- | 2.659 | 310 | 0.00504 | 8.98 |
| 1905.95 | 2.04 | 5.07 | -- | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 286.43 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 2 | 286.90 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 3 | 287.13 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 9 | 291.06 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 16 | 294.00 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 29 | 298.26 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 49 | 302.78 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 50 | 303.06 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 93 | 308.43 | wind | 3.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 94 | 308.46 | wind | 3.0 | 30 | < th | dose dependent | rect. | 3 | 8 |
| 132 | 311.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 136 | 311.90 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 12 |
| 144 | 312.68 | temperature | 20.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 189 | 314.67 | wind | 5.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 191 | 314.91 | wind | 5.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 194 | 315.01 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 202 | 315.34 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 206 | 315.46 | wind | 5.0 | 43200 | > th | dose independent | rect. | 7 | 8 |
| 216 | 315.69 | wind | 5.0 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 217 | 315.73 | wind | 5.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 218 | 315.75 | wind | 5.0 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 222 | 315.89 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 223 | 315.90 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 229 | 316.11 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 241 | 316.41 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 245 | 316.50 | wind | 5.0 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 267 | 317.02 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 269 | 317.08 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 276 | 317.20 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 279 | 317.26 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 298 | 317.67 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 311 | 317.95 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 333 | 318.29 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 334 | 318.32 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 348 | 318.59 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 370 | 318.94 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 375 | 318.97 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 387 | 318.98 | wind | 5.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 388 | 318.99 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 392 | 319.01 | radiation | 30.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 393 | 319.04 | wind | 5.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 394 | 319.06 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 405 | 319.21 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 439 | 319.48 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 464 | 319.86 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 469 | 319.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 480 | 320.04 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 489 | 320.11 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 492 | 320.13 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 497 | 320.16 | temperature | 30.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 502 | 320.18 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 18 |
| 530 | 320.55 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 543 | 320.63 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 572 | 320.79 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 580 | 320.88 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 593 | 320.96 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 606 | 321.05 | temperature | 30.0 | 1440 | > th | dose independent | sin | 13 | NA |
| 619 | 321.14 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 662 | 321.25 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 667 | 321.30 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 669 | 321.30 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 731 | 321.75 | humidity | 80.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 748 | 321.89 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 785 | 322.11 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 847 | 322.45 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 882 | 322.73 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 925 | 322.96 | temperature | 15.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 935 | 323.00 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 7 | 1 |