BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0671300 Os02g0671300|AK107063
(497 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0671300 Helix-loop-helix DNA-binding domain containing... 844 0.0
Os04g0565900 Helix-loop-helix DNA-binding domain containing... 213 3e-55
Os07g0471900 Helix-loop-helix DNA-binding domain containing... 173 3e-43
Os05g0228400 Helix-loop-helix DNA-binding domain containing... 109 5e-24
Os01g0784900 Basic helix-loop-helix dimerisation region bHL... 107 2e-23
Os05g0501200 Basic helix-loop-helix dimerisation region bHL... 105 5e-23
Os04g0631600 Basic helix-loop-helix dimerisation region bHL... 104 1e-22
Os08g0179400 Helix-loop-helix DNA-binding domain containing... 102 5e-22
Os01g0230200 Helix-loop-helix DNA-binding domain containing... 101 1e-21
Os04g0493100 Basic helix-loop-helix dimerisation region bHL... 100 3e-21
Os01g0105700 Helix-loop-helix DNA-binding domain containing... 100 4e-21
Os03g0759700 Similar to ER33 protein (Fragment) 98 1e-20
Os02g0276900 Helix-loop-helix DNA-binding domain containing... 96 8e-20
AK107340 81 2e-15
Os12g0180833 Similar to ER33 protein 74 2e-13
Os03g0279500 Basic helix-loop-helix dimerisation region bHL... 68 1e-11
>Os02g0671300 Helix-loop-helix DNA-binding domain containing protein
Length = 497
Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/497 (83%), Positives = 416/497 (83%)
Query: 1 MRLHAGAVQLQYFMPQQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMWEYHHQLSTHA 60
MRLHAGAVQLQYFMPQQG MWEYHHQLSTHA
Sbjct: 1 MRLHAGAVQLQYFMPQQGATAAAAADHHQADSATACSASTSPAAAAATMWEYHHQLSTHA 60
Query: 61 ALQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMRLPAAGEHAHGHGWSHGELSN 120
ALQ VMRLPAAGEHAHGHGWSHGELSN
Sbjct: 61 ALQPSSSFPYSYWSPYSGSTALAGSAFAADSSSSSTDVMRLPAAGEHAHGHGWSHGELSN 120
Query: 121 STTGGGYRENFLDLLASKNVTPEMFEEVPASEHYNVAPAGTTLTTTARSFDHHARSDVSP 180
STTGGGYRENFLDLLASKNVTPEMFEEVPASEHYNVAPAGTTLTTTARSFDHHARSDVSP
Sbjct: 121 STTGGGYRENFLDLLASKNVTPEMFEEVPASEHYNVAPAGTTLTTTARSFDHHARSDVSP 180
Query: 181 IKYEIAGSPLYLGGTNTVLQVQDMTMMSSTPACYGEXXXXXXXQLTKEGSCNHQQQEQHE 240
IKYEIAGSPLYLGGTNTVLQVQDMTMMSSTPACYGE QLTKEGSCNHQQQEQHE
Sbjct: 181 IKYEIAGSPLYLGGTNTVLQVQDMTMMSSTPACYGEHHHHHHHQLTKEGSCNHQQQEQHE 240
Query: 241 LAISPMASFLQQISSGSASVGVHNSSLDYSGLGDQPDKICCQDGREMEASPFGMRSLPDL 300
LAISPMASFLQQISSGSASVGVHNSSLDYSGLGDQPDKICCQDGREMEASPFGMRSLPDL
Sbjct: 241 LAISPMASFLQQISSGSASVGVHNSSLDYSGLGDQPDKICCQDGREMEASPFGMRSLPDL 300
Query: 301 GSFAGYTPAIESTSVQPYMRCANSSDSNRQEQETVPARXXXXXXXXXXTDRKKRKSEERQ 360
GSFAGYTPAIESTSVQPYMRCANSSDSNRQEQETVPAR TDRKKRKSEERQ
Sbjct: 301 GSFAGYTPAIESTSVQPYMRCANSSDSNRQEQETVPARSSSSGSGAAATDRKKRKSEERQ 360
Query: 361 ESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLH 420
ESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLH
Sbjct: 361 ESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLH 420
Query: 421 EQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTPEVYRD 480
EQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTPEVYRD
Sbjct: 421 EQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTPEVYRD 480
Query: 481 GNAMDYWTPAYRGCLYR 497
GNAMDYWTPAYRGCLYR
Sbjct: 481 GNAMDYWTPAYRGCLYR 497
>Os04g0565900 Helix-loop-helix DNA-binding domain containing protein
Length = 418
Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 161/405 (39%), Positives = 208/405 (51%), Gaps = 74/405 (18%)
Query: 106 EHAHGHGWSHGELSNSTTGGG----YRENFLDLLASKN---VTPEMFEEVPASEHY--NV 156
EH GH W+ LS G +RE+ + LL + + PE+FE VP + Y +
Sbjct: 75 EHPGGHLWNQSVLSREEEHGSNDDSFRESLVSLLDNTRDYVMAPEVFEGVPVACDYLKGM 134
Query: 157 APAGTTLTTTAR-SFDHHAR-SDVSPIKYEIAGSPLYLGGTNTVLQVQDMTMMSSTPACY 214
G + A S D++ + + VS I++ IA SPL
Sbjct: 135 DSDGMAASAVAAYSLDNNGQHASVSSIEHGIASSPLL----------------------- 171
Query: 215 GEXXXXXXXQLTKEGSCNHQQQEQHELAISPMASFLQQISSGSASVGVHNSSLDYSGLGD 274
QL K + + +Q E+ SPMA+FLQQ+ + S LD SG+G
Sbjct: 172 -------AYQLGKNSAVVQRSIQQQEVG-SPMAAFLQQL--------IPTSVLDQSGIGF 215
Query: 275 QPDKICCQDGREMEASPFGMRSLPDLGSFAGYTPAIESTSVQPYMRCANSSDSNRQEQET 334
C DG +EAS F MR+ PD+ SF+G+ S + + M S R+++ T
Sbjct: 216 GG---VCLDGSALEAS-FCMRTSPDVSSFSGH----RSATAEELM-----STDTREQEIT 262
Query: 335 VPARXXXXXXXXXXTDRKKRK-SEERQESTVKKSKQEASKA-SPPKQPVPKVKLGEKITA 392
AR +DR K+K SE R KK K E S + S PK PKVKLGEKITA
Sbjct: 263 RLARSCSSSG----SDRNKKKLSEVRGGGKAKKFKSETSHSTSSPKHQSPKVKLGEKITA 318
Query: 393 LQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQAEAS 452
LQQIVSPFGKTDTASVL ETI YIKFLHEQ+QL S+PY +S +NK + WG + +
Sbjct: 319 LQQIVSPFGKTDTASVLLETITYIKFLHEQIQLFSQPYMTNS-TNK--GHIHWGGEGKRK 375
Query: 453 KGETMEHDLRNRGLCLVPVSWTPEVYRDGNAMDYWTPAYRGCLYR 497
G +EHDLR RGLCLVPVSWT + Y D + W PAYR YR
Sbjct: 376 AG--LEHDLRGRGLCLVPVSWTSQEYCDSILPECWAPAYRNYFYR 418
>Os07g0471900 Helix-loop-helix DNA-binding domain containing protein
Length = 436
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 103/138 (74%), Gaps = 5/138 (3%)
Query: 361 ESTVKKSKQEA-SKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFL 419
E + KKSK EA S S K VPKVKLG+KITALQQIVSPFGKTDTASVL+E I YIK+L
Sbjct: 303 EGSTKKSKHEATSPTSSLKSQVPKVKLGDKITALQQIVSPFGKTDTASVLYEAINYIKWL 362
Query: 420 HEQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTPEVYR 479
HEQVQLLS+PY SS S+K N+ WG K + E DLR+RGLCLVPVS TP+VYR
Sbjct: 363 HEQVQLLSDPYMKSS-SSKDYNA--WGGLDRKEKADA-EVDLRSRGLCLVPVSCTPQVYR 418
Query: 480 DGNAMDYWTPAYRGCLYR 497
D N DYWTP YR CLYR
Sbjct: 419 DNNGPDYWTPPYRSCLYR 436
>Os05g0228400 Helix-loop-helix DNA-binding domain containing protein
Length = 268
Score = 109 bits (272), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 87/164 (53%), Gaps = 29/164 (17%)
Query: 362 STVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHE 421
S +KK++ +AS ++ V K +LG++ITAL QIVSPFGKTDTASVL ETI YI+FL
Sbjct: 106 SALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLS 165
Query: 422 QVQLLSEPYTNSSRSNKQGNSVPWGDQAEA----SKGETMEH------------------ 459
Q++ LS PY + + P G++ G+ + H
Sbjct: 166 QIEALSYPYMGDANGTGPMQNGPVGERNPGLFPEYPGQLLNHNGNTGAQQPAAQPEQQGA 225
Query: 460 ------DLRNRGLCLVPVSWTPEVYRDGNAMDYWTPAYRGCLYR 497
DLR+RGLCLVPVS T D NA DYW PA G + R
Sbjct: 226 NDDGKKDLRSRGLCLVPVSCTSHFGGD-NAADYWAPAPLGGILR 268
>Os01g0784900 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 392
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/145 (46%), Positives = 87/145 (60%), Gaps = 11/145 (7%)
Query: 354 RKSEERQESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETI 413
RKS + K+ + E P + V K KLG++ITALQQ+VSPFGKTDTASVL E I
Sbjct: 255 RKSVSDSPAAAKRPRIEVPSPLPTFK-VRKEKLGDRITALQQLVSPFGKTDTASVLHEAI 313
Query: 414 KYIKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQ--AEASK-GETMEHDLRNRGLCLVP 470
+YIKFLHEQV LS PY K GN + Q +E++K E + DLR+RGLCLVP
Sbjct: 314 EYIKFLHEQVASLSSPYL------KNGNPLQHFQQKGSESTKDAEQPKPDLRSRGLCLVP 367
Query: 471 VSWTPEVYRDGNAMDYWTPAYRGCL 495
V+ T V + ++W P + G
Sbjct: 368 VASTYTVASE-TVPEFWHPTFGGTF 391
>Os05g0501200 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 323
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 355 KSEERQESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIK 414
+S + KK + EA P + V K KLG++ITALQQ+VSPFGKTDTASVL E I+
Sbjct: 186 RSSPGSPAAAKKPRIEAPSPMPTFK-VRKEKLGDRITALQQLVSPFGKTDTASVLHEAIE 244
Query: 415 YIKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWT 474
YIKFLH+QV LS PY R + + G E + DLR+RGLCLVPV+ T
Sbjct: 245 YIKFLHDQVASLSSPYLRCGRPVQLQHQQ--GSHKVNGNCEGKQLDLRSRGLCLVPVAST 302
Query: 475 PEVYRDGNAMDYWTPAYRGCL 495
V + A ++W P + G
Sbjct: 303 YTVASE-TATEFWHPTFGGTF 322
>Os04g0631600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 437
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 81/131 (61%), Gaps = 7/131 (5%)
Query: 359 RQESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKF 418
++E+ KK + E P + V K KLG++ITALQQ+VSPFGKTDTASVL ETI+YIKF
Sbjct: 307 KKETAFKKPRLETPSPLPTFK-VRKEKLGDRITALQQLVSPFGKTDTASVLHETIEYIKF 365
Query: 419 LHEQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTPEVY 478
LH+QV LS PY + + VP + K + E L+ RGLCLVP+S T V
Sbjct: 366 LHDQVGALSAPYLKNG-----AHQVPHLKNSSPDKSKHGEISLKGRGLCLVPISSTFAVA 420
Query: 479 RDGNAMDYWTP 489
+ ++ WTP
Sbjct: 421 SE-VPVELWTP 430
>Os08g0179400 Helix-loop-helix DNA-binding domain containing protein
Length = 467
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 77/126 (61%), Gaps = 7/126 (5%)
Query: 376 PPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYT-NSS 434
P K V K KLG+++TALQQ+VSPFGKTDTASVL ETI+YIKFLH+QV LS PY N
Sbjct: 345 PIKFHVRKEKLGDRVTALQQLVSPFGKTDTASVLHETIEYIKFLHDQVGALSAPYLKNRQ 404
Query: 435 RSNKQGNSVPWGDQAEASKGETM---EHDLRNRGLCLVPVSWTPEVYRDGNAMDYWTPAY 491
+ NS + GE + DL RGLCLVP+S T V + +D+WTP
Sbjct: 405 QVPHLKNSTGVDNDGGGGGGEATAASKRDLTGRGLCLVPISSTFAVASE-TPVDFWTP-- 461
Query: 492 RGCLYR 497
G +R
Sbjct: 462 FGAAFR 467
>Os01g0230200 Helix-loop-helix DNA-binding domain containing protein
Length = 406
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 86/149 (57%), Gaps = 23/149 (15%)
Query: 362 STVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHE 421
S +KK++ +AS ++ V K +LG++ITAL QIVSPFGKTDTASVL ETI YI+FL
Sbjct: 238 SALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLG 297
Query: 422 QVQLLSEPYTN---SSRSNKQGNSVPWGDQA------EASKGETMEH-----------DL 461
Q++ LS PY S+ +Q + G+++ E G+ E DL
Sbjct: 298 QIEALSYPYLGQCCSANPMQQQTGIMAGERSTDGLFPEFPAGQDAEKDGKKQQAKKDDDL 357
Query: 462 RNRGLCLVPVSWTPEVYRDGNAM---DYW 487
R+RGLCLVPVS P + D + + D+W
Sbjct: 358 RSRGLCLVPVSCMPHLAADNDVVVGSDFW 386
>Os04g0493100 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 156
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 13/135 (9%)
Query: 356 SEERQESTVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKY 415
SEE T KK + + + +P K K+GE++ ALQQ+VSPFGKTDTASVL E Y
Sbjct: 29 SEEFGSMTSKKPRNTSPRDAPVSPKEKKDKIGERVAALQQLVSPFGKTDTASVLQEASGY 88
Query: 416 IKFLHEQVQLLSEPYTNSSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTP 475
IKFLH+Q+++LS PY + VP A+ + + LRNRGLCLVPV T
Sbjct: 89 IKFLHQQLEVLSSPYM-------RAPPVPG-----AAPEDPDHYSLRNRGLCLVPVDQTL 136
Query: 476 EVYRDGNAMDYWTPA 490
++ + N D W PA
Sbjct: 137 QLTQ-SNGADLWAPA 150
>Os01g0105700 Helix-loop-helix DNA-binding domain containing protein
Length = 388
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 117/242 (48%), Gaps = 17/242 (7%)
Query: 256 GSASVGVHNSSLDYSGLGDQPDKICCQDGREMEASPFGMRSLPDLGSFAGYTPAIESTSV 315
G+ ++ S L GD+P +ICC+ + A+ G S+ D Y +
Sbjct: 159 GAVLPSINVSRLQKLAAGDEPLQICCKR-QAAAAAVVGHSSIRDEHVPCPY-------AG 210
Query: 316 QPYMRCANSSDSNRQEQETVPARXXXXXXXXXXTDRKKRKSEERQESTVKKSKQEASKAS 375
P S++ + ++ T A T+ R S S+ K + S +
Sbjct: 211 PPAHLIQGPSNTLQMKRNTNAAAQGRGGRHGSSTEH--RSSTALPPSSKKPRLESHSSSM 268
Query: 376 PPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYTNSSR 435
P V K KLG++I ALQQ+VSPFGKTDTASVL E I YIKFL +QV+ LS PY SS+
Sbjct: 269 LPSFKVRKEKLGDRIAALQQLVSPFGKTDTASVLMEAIGYIKFLQDQVETLSGPYLRSSK 328
Query: 436 SNKQGNSVPWGDQAEASKG---ETMEHDLRNRGLCLVPVSWTPEVYRDGNAMDYWTPA-Y 491
++K+ Q + + + DLR+RGLCLVP+S T V N W P +
Sbjct: 329 NSKKLACRAAQQQRKGTSNGGDAAAKLDLRSRGLCLVPLSCTSYVT---NENGVWPPPNF 385
Query: 492 RG 493
RG
Sbjct: 386 RG 387
>Os03g0759700 Similar to ER33 protein (Fragment)
Length = 317
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 69/105 (65%), Gaps = 8/105 (7%)
Query: 378 KQP-VPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHEQVQLLSEPYTN---- 432
K+P V + +LGE+I ALQQ+VSPFGK+DTASVL E + YI+FLH+QVQ+LS PY
Sbjct: 156 KRPRVRRERLGERIIALQQLVSPFGKSDTASVLHEALGYIRFLHDQVQVLSSPYLQRLPP 215
Query: 433 SSRSNKQGNSVPWGDQAEASKGETMEHDLRNRGLCLVPVSWTPEV 477
S+R +Q P AE DLR+RGLCLVP+S T V
Sbjct: 216 SARVPEQERGTP---AAEEQPPALRPSDLRSRGLCLVPISCTEHV 257
>Os02g0276900 Helix-loop-helix DNA-binding domain containing protein
Length = 412
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 83/173 (47%), Gaps = 43/173 (24%)
Query: 362 STVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHE 421
+ KK++ + + V K KLG++ITAL Q+VSPFGKTDTASVL E I YI+FLH
Sbjct: 234 AAFKKARTQEPSPAQATVKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLHG 293
Query: 422 QVQLLSEPYT-------------------------NSSRSNKQGNSV-------PWGDQA 449
Q++ LS PY +SR + NS+ D A
Sbjct: 294 QIEALSSPYLGNGGSSSNGGGGGGGGSNSKLQHQPEASRVQGERNSIFPEDPGQLLHDNA 353
Query: 450 EASKG---------ETMEHDLRNRGLCLVPVSWTPEVYRDGNAMDYWT--PAY 491
+G E DLR+RGLCLVPVS T +V D DYW PA+
Sbjct: 354 VKKRGQPDQDESCEEAKTMDLRSRGLCLVPVSCTVDVGVDAGPADYWAAPPAF 406
>AK107340
Length = 372
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 58/87 (66%)
Query: 362 STVKKSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHE 421
S +KK++ +AS ++ V K +LG++ITAL QIVSPFGKTDTASVL ETI YI+FL
Sbjct: 253 SALKKARVQASSSAQSTLKVRKERLGDRITALHQIVSPFGKTDTASVLQETIGYIRFLLS 312
Query: 422 QVQLLSEPYTNSSRSNKQGNSVPWGDQ 448
Q++ LS PY + + P G++
Sbjct: 313 QIEALSYPYMGDANGTGPMQNGPVGER 339
>Os12g0180833 Similar to ER33 protein
Length = 132
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 35/39 (89%)
Query: 382 PKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLH 420
PKV LGEKI ALQQI+SPFGKTDTASVL ETI YIKFLH
Sbjct: 67 PKVNLGEKIMALQQIMSPFGKTDTASVLLETITYIKFLH 105
>Os03g0279500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 415
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 48/65 (73%), Gaps = 3/65 (4%)
Query: 366 KSKQEASKASPPKQPVPKVKLGEKITALQQIVSPFGKTDTASVLFETIKYIKFLHEQVQL 425
K + + +KA+ K+ KLG++ITALQQ+VSP+GKTDTASVL E I+ LH+Q+Q+
Sbjct: 264 KPRNQTTKATCKKR---SQKLGDRITALQQLVSPYGKTDTASVLHEAAACIRQLHQQIQI 320
Query: 426 LSEPY 430
L+ PY
Sbjct: 321 LTAPY 325
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.127 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,552,724
Number of extensions: 563055
Number of successful extensions: 1723
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1708
Number of HSP's successfully gapped: 16
Length of query: 497
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 392
Effective length of database: 11,553,331
Effective search space: 4528905752
Effective search space used: 4528905752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)