BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0416700 Os04g0416700|AK068271
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0416700 Harpin-induced 1 domain containing protein 407 e-114
Os02g0538700 Harpin-induced 1 domain containing protein 291 3e-79
Os12g0159600 Harpin-induced 1 domain containing protein 221 2e-58
Os11g0157200 Harpin-induced 1 domain containing protein 217 6e-57
Os04g0685400 Harpin-induced 1 domain containing protein 156 1e-38
Os08g0102700 Harpin-induced 1 domain containing protein 139 1e-33
Os05g0367900 Harpin-induced 1 domain containing protein 89 3e-18
Os07g0531500 Harpin-induced 1 domain containing protein 84 6e-17
Os04g0685300 Harpin-induced 1 domain containing protein 67 1e-11
>Os04g0416700 Harpin-induced 1 domain containing protein
Length = 220
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/220 (91%), Positives = 202/220 (91%)
Query: 1 MGKDKHHRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDL 60
MGKDKHHRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDL
Sbjct: 1 MGKDKHHRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDL 60
Query: 61 SDPAISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKDVSVWS 120
SDPAISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKDVSVWS
Sbjct: 61 SDPAISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKDVSVWS 120
Query: 121 PVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTCPALLA 180
PVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTCPALLA
Sbjct: 121 PVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTCPALLA 180
Query: 181 ASGGNVXXXXXXXXXXXXXXXXXXTVSLKFAQAADCTVDV 220
ASGGNV TVSLKFAQAADCTVDV
Sbjct: 181 ASGGNVGGAFAMSATAGGGAGGNATVSLKFAQAADCTVDV 220
>Os02g0538700 Harpin-induced 1 domain containing protein
Length = 224
Score = 291 bits (745), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 171/224 (76%), Gaps = 4/224 (1%)
Query: 1 MGKDKHH-RDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNID 59
M K+KHH R+ LRRCCG +AACIL L ++VGFI LV+YLA+ PSKPSFYLQD+QLR++D
Sbjct: 1 MSKEKHHKREHHLRRCCGGMAACILALVLVVGFIALVVYLALRPSKPSFYLQDLQLRSVD 60
Query: 60 LSDPAISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKDVSVW 119
L DP++S QVT+ASRNPND VGV+Y+ L VF TYR+EP+TVPV LP YQGH+DV++W
Sbjct: 61 LGDPSLSATAQVTLASRNPNDHVGVHYRRLDVFVTYRDEPVTVPVSLPPTYQGHRDVTIW 120
Query: 120 SPVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTCPALL 179
SPV+SGESVPV +VADA+RQD+AAGYV L VKVDGRVKWKVGSWVSG YHLFV+CPA+L
Sbjct: 121 SPVLSGESVPVAGFVADALRQDVAAGYVALQVKVDGRVKWKVGSWVSGSYHLFVSCPAML 180
Query: 180 AASG-GNV--XXXXXXXXXXXXXXXXXXTVSLKFAQAADCTVDV 220
A++G G V SL+F Q C+V+V
Sbjct: 181 ASAGPGGVGPMPLGGASAAVVNGTGAGAVASLRFTQPTGCSVEV 224
>Os12g0159600 Harpin-induced 1 domain containing protein
Length = 212
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/192 (55%), Positives = 135/192 (70%), Gaps = 7/192 (3%)
Query: 1 MGKD-KHHRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNID 59
MGKD H D R+ C ++ LA+LVG I L++YL + P+ P FYLQD LR +D
Sbjct: 1 MGKDCGKHGDDDFRQGCRRFITVLVVLAILVGIIALIVYLVLRPTHPRFYLQDATLRQLD 60
Query: 60 LSDPA------ISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGH 113
LS+ + +S +QVT+ASRNPNDRVGVYY L V+ +Y+ + ITV LP +YQGH
Sbjct: 61 LSNSSSTAGGVLSTTIQVTVASRNPNDRVGVYYDRLDVYASYKYQQITVAASLPPVYQGH 120
Query: 114 KDVSVWSPVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFV 173
DV VWSPV++G SVP Y+ADA+ QD AGY++L VK+DGRV+WKVGSW+SG YHLFV
Sbjct: 121 GDVDVWSPVLAGPSVPFAPYLADAISQDCQAGYLILQVKIDGRVRWKVGSWISGHYHLFV 180
Query: 174 TCPALLAASGGN 185
TCPA L +GGN
Sbjct: 181 TCPAFLVTAGGN 192
>Os11g0157200 Harpin-induced 1 domain containing protein
Length = 210
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 135/190 (71%), Gaps = 5/190 (2%)
Query: 1 MGKD-KHHRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNID 59
MGKD +H D +R+ C + + LA++V I L++YL + P+ P F+LQD LR +D
Sbjct: 1 MGKDCGNHGDDDIRQACRRLLTILFGLALIVAIIALIVYLVLRPTHPRFFLQDATLRQLD 60
Query: 60 LSDPA----ISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKD 115
LS+ + +S LQVT+ASRNPNDRVGVYY L V+ +Y+ + IT+ LP +YQGH D
Sbjct: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
Query: 116 VSVWSPVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTC 175
V VWSPV+SG VP Y+ DA+ +D+AA Y++L VK+DGRV+WKVGSW+SG YHLFVTC
Sbjct: 121 VDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVTC 180
Query: 176 PALLAASGGN 185
PA ASGGN
Sbjct: 181 PAFFIASGGN 190
>Os04g0685400 Harpin-induced 1 domain containing protein
Length = 220
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 117/193 (60%), Gaps = 13/193 (6%)
Query: 32 FIVLVIYLAIHPSKPSFYLQDVQLRNIDLSDPA---ISLNLQVTIASRNPNDRVGVYYKT 88
FIVLV++LA+ P KP FYLQD+ + ++++ PA + +Q T+A+RN N RVGVYY
Sbjct: 37 FIVLVVWLALRPHKPRFYLQDLSVLCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDK 96
Query: 89 LHVFTTYREEPITVPVELPAIYQGHKDVSVWSPVM-SGESVPVGQYVADAMRQDIAAGYV 147
+ V+ Y++ ITVP LP YQGH D SVWSP + S + V + +A A+ QD AGYV
Sbjct: 97 VDVYAQYKDVAITVPTRLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYV 156
Query: 148 LLHVKVDGRVKWKVGSWVSGGYHLFVTCPALLAASGGNVXXXXXXXXXXXXXXXXXXTVS 207
L+ +++DG V+WKVG+W+SG YHL V CPALL + G
Sbjct: 157 LVDIRLDGWVRWKVGTWISGHYHLRVNCPALLTVNDGK---------GSYGVNYGGGDGY 207
Query: 208 LKFAQAADCTVDV 220
+F QAA C VDV
Sbjct: 208 FRFQQAAACAVDV 220
>Os08g0102700 Harpin-induced 1 domain containing protein
Length = 227
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 129/228 (56%), Gaps = 27/228 (11%)
Query: 7 HRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDLSDPA-- 64
R + RRCC A I + +L+ IVL+++L + P+KP FYL D+ + ++++
Sbjct: 13 ERQRLYRRCC----AAIFGILLLLLLIVLIVWLILRPTKPRFYLNDLTVVCLNVTTGGSY 68
Query: 65 ------------ISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQG 112
+++ +Q T+A+RN N+RVG+YY V+ Y+ ITVP LP +YQG
Sbjct: 69 AGATASSGYFSFLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLPPVYQG 128
Query: 113 HKDVSVWSPVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLF 172
H D++VWSP +SG +V + Y+A ++ QD AGY+L+ ++VDG +++K G++++G YHL
Sbjct: 129 HPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAFITGHYHLR 188
Query: 173 VTCPALLAASGGNVXXXXXXXXXXXXXXXXXXTVSLKFAQAADCTVDV 220
V CPALL + G +F +AA C VDV
Sbjct: 189 VRCPALLIVNDGRG---------SYGSNSGGGNGYFRFQRAAACVVDV 227
>Os05g0367900 Harpin-induced 1 domain containing protein
Length = 260
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 23 ILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDLSD-----------PA-ISLNLQ 70
+L + +L G LV+YL PS+P+F + V + ++ L+ PA ++ + Q
Sbjct: 60 VLVVILLAGITALVLYLVYRPSRPAFAVTSVAVYSLSLNGTGTGTGAVAGGPATLAASFQ 119
Query: 71 VTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKDVSVWSPVM----SGE 126
+T+ RNPN+R Y L + YR EPIT P +P + Q +PV+ +
Sbjct: 120 LTLVIRNPNERSAARYDRLAAYVAYRGEPITAPAPMPPLVQDADSAVAVAPVLGAGAAAP 179
Query: 127 SVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTC 175
VPV A A+ D++ G V L V V GRV++ G + SG + ++ C
Sbjct: 180 PVPVSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRSGWHSMYARC 228
>Os07g0531500 Harpin-induced 1 domain containing protein
Length = 200
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 14 RCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDLSDPAISLNLQVTI 73
RC + A +LT+ ++ G I+ V++L++ P +P F+L D + N++ A++L ++ T+
Sbjct: 16 RCINFLCAVLLTMVLVAGIIMFVLWLSLRPHRPRFFLDDFTIPNLNRQSGAVNLPVRFTV 75
Query: 74 ASRNPNDRVGVYYKTLHVFTTYREEPI-TVPVELPAIYQGHKDVSVWSPVMSGESVPVGQ 132
RNPN ++G++Y T+ Y + + + PV P Q D ++GE G
Sbjct: 76 DERNPNQKIGIHYGTIFGSVYYNDLLVASGPVVQPFYQQPKGDTP-----LAGELTASGP 130
Query: 133 YVADAMRQ----DIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTCPALLAASG 183
D Q D AAG V L + ++ V+++V W + +H+ V C L G
Sbjct: 131 TPGDPAWQRFAGDAAAGSVALRLLLNSTVRFQVQMWDTREHHMKVDCEFGLRGDG 185
>Os04g0685300 Harpin-induced 1 domain containing protein
Length = 205
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 2/164 (1%)
Query: 23 ILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDLS-DPAISLNLQVTIASRNPNDR 81
+++L V +G + L+ YL P + + L LS + A++ +L V + RNPN R
Sbjct: 30 LISLLVTLGVLALIFYLIFRPHMIAATVDSAALTQFTLSTNSALAYSLTVDLTVRNPNKR 89
Query: 82 VGVYYKTLHVFTTYREEPITVPVELPAIYQGHKDVSVWSPVMSGESVPVGQYVADAMRQD 141
VG+YY + + + L + YQ + + SP G+ G A R
Sbjct: 90 VGLYYDNVESLALFDGQRFGY-APLDSFYQSTEASTKLSPAFKGQQPLQGDITAANFRSQ 148
Query: 142 IAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTCPALLAASGGN 185
AG + VK++ +++ KV ++ G ++CP + AS N
Sbjct: 149 QTAGKFDIEVKLNAKLRVKVWAFKVPGPKAKISCPITVPASAPN 192
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,211,047
Number of extensions: 285673
Number of successful extensions: 612
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 11
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)