Os04g0416700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os04g0416700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.69 | 0.488 | 8.52 | -2.93 | 3.38 | 3.37 | -1.04 | -4.14 | -0.96 | 21.5 | 10.78 | 110 | 21 | -- |
| 117.52 | 0.505 | 8.45 | -2.6 | 2.69 | 2.68 | 1.24 | -- | -0.826 | 21.4 | 14.95 | 56 | 20.5 | -- |
| 108.03 | 0.484 | 8.51 | -2.84 | 2.91 | 3.05 | -- | -3.01 | -0.949 | 21.7 | 13.69 | 115 | 20.7 | -- |
| 122.84 | 0.516 | 8.47 | -2.66 | 2.97 | 2.9 | -- | -- | -0.918 | 21.3 | 13.28 | 151 | 21.6 | -- |
| 150.39 | 0.571 | 8.39 | -2.64 | -- | 1.87 | -- | -0.0544 | -0.817 | -- | 4.79 | 1009 | 19.9 | -- |
| 166.1 | 0.604 | 8.37 | -2.25 | 1.23 | -- | 1 | -- | -0.653 | 19.4 | -- | -- | -- | -- |
| 168.76 | 0.608 | 8.37 | -2.28 | 1.24 | -- | -- | -- | -0.651 | 19.3 | -- | -- | -- | -- |
| 150.18 | 0.571 | 8.38 | -2.61 | -- | 1.88 | -- | -- | -0.822 | -- | 2.893 | 1004 | 19.9 | -- |
| 293.19 | 0.797 | 8.37 | -- | 2.44 | 1.79 | -- | -- | -0.497 | 20.7 | 8.28 | 148 | 21.7 | -- |
| 250.12 | 0.739 | 8.34 | -2.3 | -- | -- | -- | -- | -0.672 | -- | -- | -- | -- | -- |
| 305.24 | 0.817 | 8.31 | -- | 1.26 | -- | -- | -- | -0.397 | 19.1 | -- | -- | -- | -- |
| 305.32 | 0.814 | 8.28 | -- | -- | -1.26 | -- | -- | -0.398 | -- | -2655 | 15 | 23 | -- |
| 389.34 | 0.921 | 8.29 | -- | -- | -- | -- | -- | -0.417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.40 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 3 | 108.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 6 | 109.32 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 8 | 109.53 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 15 | 110.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 33 | 112.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 38 | 112.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 41 | 112.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 44 | 112.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 47 | 113.03 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 48 | 113.20 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 10 |
| 51 | 113.59 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 72 | 114.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 96 | 115.62 | temperature | 25 | 90 | < th | dose dependent | sin | 1 | NA |
| 129 | 116.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 146 | 117.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 171 | 117.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 199 | 118.35 | temperature | 15 | 1440 | > th | dose independent | rect. | 6 | 16 |
| 209 | 118.52 | radiation | 20 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 212 | 118.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 19 |
| 222 | 118.84 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 244 | 119.26 | temperature | 20 | 270 | > th | dose independent | sin | 2 | NA |
| 430 | 122.32 | temperature | 15 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 439 | 122.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 18 |
| 444 | 122.61 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 446 | 122.64 | temperature | 20 | 270 | < th | dose independent | rect. | 4 | 8 |
| 523 | 123.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 16 |
| 638 | 124.71 | temperature | 15 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 725 | 125.43 | humidity | 50 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 740 | 125.60 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 6 |
| 747 | 125.70 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 10 |
| 764 | 125.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 833 | 126.60 | temperature | 20 | 270 | < th | dose independent | sin | 2 | NA |
| 834 | 126.60 | humidity | 90 | 90 | < th | dose independent | rect. | 8 | 9 |
| 842 | 126.66 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 22 |
| 916 | 127.30 | humidity | 90 | 270 | > th | dose dependent | sin | 23 | NA |
| 936 | 127.41 | humidity | 90 | 90 | > th | dose independent | rect. | 5 | 16 |
| 993 | 127.97 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 15 |