Os04g0685400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os04g0685400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.04 | 0.649 | 9.54 | -1.69 | 1.58 | 2.9 | 2.01 | -1.2 | -0.471 | 3.32 | 9.867 | 319 | 13.6 | 16 |
| 191.84 | 0.645 | 9.52 | -1.56 | 1.41 | 3.08 | 1.57 | -- | -0.433 | 3.8 | 8.55 | 335 | 13.7 | 15.7 |
| 199.47 | 0.658 | 9.52 | -1.56 | 1.49 | 2.94 | -- | 0.49 | -0.432 | 3.53 | 9.24 | 330 | 13.7 | 15.8 |
| 199.72 | 0.658 | 9.53 | -1.58 | 1.41 | 3.05 | -- | -- | -0.441 | 3.66 | 8.652 | 334 | 13.7 | 15.7 |
| 203.31 | 0.664 | 9.54 | -1.43 | -- | 3.78 | -- | 1.24 | -0.439 | -- | 3.539 | 406 | 14.7 | 14.7 |
| 288.13 | 0.796 | 9.51 | -1.19 | 2.95 | -- | 1.37 | -- | -0.17 | 1.19 | -- | -- | -- | -- |
| 295.86 | 0.805 | 9.51 | -1.24 | 2.94 | -- | -- | -- | -0.178 | 1.18 | -- | -- | -- | -- |
| 206.16 | 0.669 | 9.54 | -1.56 | -- | 3.81 | -- | -- | -0.462 | -- | 3.75 | 406 | 14.7 | 14.7 |
| 263.38 | 0.756 | 9.48 | -- | 1.46 | 2.72 | -- | -- | -0.236 | 3.12 | 7.928 | 318 | 13.9 | 15.9 |
| 832.53 | 1.35 | 9.47 | -1.12 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 336.11 | 0.858 | 9.48 | -- | 2.92 | -- | -- | -- | -0.04 | 1.16 | -- | -- | -- | -- |
| 268.82 | 0.764 | 9.51 | -- | -- | 3.54 | -- | -- | -0.258 | -- | 2.149 | 397 | 14.8 | 14.6 |
| 865.77 | 1.37 | 9.44 | -- | -- | -- | -- | -- | 0.00629 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 14 | 16 |
| 16 | 203.88 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 16 |
| 36 | 209.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 42 | 210.38 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 66 | 211.83 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 6 |
| 71 | 212.29 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 90 | 213.28 | humidity | 70 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 107 | 213.76 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 112 | 213.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 113 | 213.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 115 | 213.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 118 | 214.00 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 121 | 214.03 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 170 | 215.33 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 18 |
| 172 | 215.51 | temperature | 15 | 720 | > th | dose dependent | sin | 17 | NA |
| 179 | 215.63 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 19 |
| 213 | 216.02 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 15 |
| 218 | 216.13 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 19 |
| 229 | 216.24 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 233 | 216.26 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 21 |
| 240 | 216.36 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 255 | 216.41 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 273 | 216.55 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 300 | 216.75 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 305 | 216.77 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 325 | 216.89 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 375 | 217.22 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 22 |
| 387 | 217.29 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 11 |
| 427 | 217.47 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 435 | 217.52 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 447 | 217.57 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 18 |
| 458 | 217.59 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 10 |
| 461 | 217.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 486 | 217.64 | temperature | 30 | 720 | < th | dose dependent | sin | 15 | NA |
| 497 | 217.68 | wind | 5 | 43200 | < th | dose independent | sin | 0 | NA |
| 503 | 217.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 515 | 217.74 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 522 | 217.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 22 |
| 532 | 217.78 | wind | 3 | 43200 | > th | dose dependent | sin | 1 | NA |
| 578 | 217.94 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 581 | 217.95 | wind | 5 | 43200 | > th | dose independent | sin | 0 | NA |
| 585 | 217.97 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 631 | 218.08 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 632 | 218.08 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 21 |
| 644 | 218.12 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 685 | 218.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 12 |
| 693 | 218.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 20 |
| 696 | 218.27 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 712 | 218.29 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 22 |
| 750 | 218.40 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 752 | 218.40 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 758 | 218.42 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 13 |
| 793 | 218.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 798 | 218.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 799 | 218.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 805 | 218.47 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 811 | 218.48 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 814 | 218.49 | temperature | 30 | 1440 | < th | dose independent | sin | 12 | NA |
| 815 | 218.49 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 6 |
| 833 | 218.52 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 851 | 218.56 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 856 | 218.56 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 867 | 218.57 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 883 | 218.59 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 928 | 218.67 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 934 | 218.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 19 |
| 980 | 218.75 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 984 | 218.76 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |