BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0685400 Os04g0685400|AK103610
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0685400 Harpin-induced 1 domain containing protein 367 e-102
Os08g0102700 Harpin-induced 1 domain containing protein 224 5e-59
Os12g0159600 Harpin-induced 1 domain containing protein 159 1e-39
Os11g0157200 Harpin-induced 1 domain containing protein 153 8e-38
Os04g0416700 Harpin-induced 1 domain containing protein 144 5e-35
Os02g0538700 Harpin-induced 1 domain containing protein 144 7e-35
>Os04g0685400 Harpin-induced 1 domain containing protein
Length = 220
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/220 (83%), Positives = 184/220 (83%)
Query: 1 MSVIKDCGGHKGCECEKEKVHRRXXXXXXXXXXXXXXXXXXXXXALRPHKPRFYLQDLSV 60
MSVIKDCGGHKGCECEKEKVHRR ALRPHKPRFYLQDLSV
Sbjct: 1 MSVIKDCGGHKGCECEKEKVHRRLCWALVALVLLTLFIVLVVWLALRPHKPRFYLQDLSV 60
Query: 61 LCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQG 120
LCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQG
Sbjct: 61 LCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQG 120
Query: 121 HYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHL 180
HYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHL
Sbjct: 121 HYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHL 180
Query: 181 RVNCPALLTVNDXXXXXXXXXXXXXXXFRFQQAAACAVDV 220
RVNCPALLTVND FRFQQAAACAVDV
Sbjct: 181 RVNCPALLTVNDGKGSYGVNYGGGDGYFRFQQAAACAVDV 220
>Os08g0102700 Harpin-induced 1 domain containing protein
Length = 227
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 146/228 (64%), Gaps = 14/228 (6%)
Query: 4 IKDCGGHKGCECEKEKVHRRXXXXXXXXXXXXXXXXXXXXXALRPHKPRFYLQDLSVLCL 63
IK C HK +CE+++++RR LRP KPRFYL DL+V+CL
Sbjct: 3 IKHCEQHK--DCERQRLYRRCCAAIFGILLLLLLIVLIVWLILRPTKPRFYLNDLTVVCL 60
Query: 64 NVTPPAS-----------AYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPT 112
NVT S ++L TMQ T+AARN N RVG+YYD+ DVYA+YK + ITVPT
Sbjct: 61 NVTTGGSYAGATASSGYFSFLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPT 120
Query: 113 RLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGT 172
LP YQGH D +VWSPFL S ++V LPP LAV++ QDETAGY+LV IR+DGW+R+K G
Sbjct: 121 SLPPVYQGHPDLTVWSPFL-SGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGA 179
Query: 173 WISGHYHLRVNCPALLTVNDXXXXXXXXXXXXXXXFRFQQAAACAVDV 220
+I+GHYHLRV CPALL VND FRFQ+AAAC VDV
Sbjct: 180 FITGHYHLRVRCPALLIVNDGRGSYGSNSGGGNGYFRFQRAAACVVDV 227
>Os12g0159600 Harpin-induced 1 domain containing protein
Length = 212
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/219 (43%), Positives = 116/219 (52%), Gaps = 12/219 (5%)
Query: 5 KDCGGHKGCECEKEKVHRRXXXXXXXXXXXXXXXXXXXXXALRPHKPRFYLQDLSVLCL- 63
KDCG H + + + RR LRP PRFYLQD ++ L
Sbjct: 3 KDCGKHG--DDDFRQGCRRFITVLVVLAILVGIIALIVYLVLRPTHPRFYLQDATLRQLD 60
Query: 64 --NVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQGH 121
N + A L TT+Q TVA+RN N RVGVYYD++DVYA YK ITV LP YQGH
Sbjct: 61 LSNSSSTAGGVLSTTIQVTVASRNPNDRVGVYYDRLDVYASYKYQQITVAASLPPVYQGH 120
Query: 122 YDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHLR 181
D VWSP L V P LA A++QD AGY+++ +++DG VRWKVG+WISGHYHL
Sbjct: 121 GDVDVWSPVLAG-PSVPFAPYLADAISQDCQAGYLILQVKIDGRVRWKVGSWISGHYHLF 179
Query: 182 VNCPALLTVNDXXXXXXXXXXXXXXXFRFQQAAACAVDV 220
V CPA L FRFQ C V+V
Sbjct: 180 VTCPAFLVT------AGGNGSPGASGFRFQTTTYCHVEV 212
>Os11g0157200 Harpin-induced 1 domain containing protein
Length = 210
Score = 153 bits (387), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 116/217 (53%), Gaps = 10/217 (4%)
Query: 5 KDCGGHKGCECEKEKVHRRXXXXXXXXXXXXXXXXXXXXXALRPHKPRFYLQDLSVLCLN 64
KDCG H + + + RR LRP PRF+LQD ++ L+
Sbjct: 3 KDCGNHG--DDDIRQACRRLLTILFGLALIVAIIALIVYLVLRPTHPRFFLQDATLRQLD 60
Query: 65 VTPPA-SAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQGHYD 123
++ + S L T +Q TVA+RN N RVGVYYD++DVYA YK IT+ LP YQGH D
Sbjct: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
Query: 124 QSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHLRVN 183
VWSP L D V P L ALA+D A Y+++ +++DG VRWKVG+WISGHYHL V
Sbjct: 121 VDVWSPVLSGPD-VPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVT 179
Query: 184 CPALLTVNDXXXXXXXXXXXXXXXFRFQQAAACAVDV 220
CPA + +FQ A C V+V
Sbjct: 180 CPAFFIASG------GNGYPGANGLKFQTATYCRVEV 210
>Os04g0416700 Harpin-induced 1 domain containing protein
Length = 220
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 108/185 (58%), Gaps = 13/185 (7%)
Query: 45 ALRPHKPRFYLQDLSVLCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYK 104
A+ P KP FYLQD+ + ++++ PA + +Q T+A+RN N RVGVYY + V+ Y+
Sbjct: 40 AIHPSKPSFYLQDVQLRNIDLSDPA---ISLNLQVTIASRNPNDRVGVYYKTLHVFTTYR 96
Query: 105 DVAITVPTRLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDG 164
+ ITVP LP YQGH D SVWSP + S + V + +A A+ QD AGYVL+ +++DG
Sbjct: 97 EEPITVPVELPAIYQGHKDVSVWSPVM-SGESVPVGQYVADAMRQDIAAGYVLLHVKVDG 155
Query: 165 WVRWKVGTWISGHYHLRVNCPALLTVNDXXXXXX---------XXXXXXXXXFRFQQAAA 215
V+WKVG+W+SG YHL V CPALL + +F QAA
Sbjct: 156 RVKWKVGSWVSGGYHLFVTCPALLAASGGNVGGAFAMSATAGGGAGGNATVSLKFAQAAD 215
Query: 216 CAVDV 220
C VDV
Sbjct: 216 CTVDV 220
>Os02g0538700 Harpin-induced 1 domain containing protein
Length = 224
Score = 144 bits (362), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 107/188 (56%), Gaps = 16/188 (8%)
Query: 45 ALRPHKPRFYLQDLSVLCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYK 104
ALRP KP FYLQDL + +++ P+ L T Q T+A+RN N VGV+Y ++DV+ Y+
Sbjct: 41 ALRPSKPSFYLQDLQLRSVDLGDPS---LSATAQVTLASRNPNDHVGVHYRRLDVFVTYR 97
Query: 105 DVAITVPTRLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDG 164
D +TVP LP YQGH D ++WSP L S + V + +A AL QD AGYV + +++DG
Sbjct: 98 DEPVTVPVSLPPTYQGHRDVTIWSPVL-SGESVPVAGFVADALRQDVAAGYVALQVKVDG 156
Query: 165 WVRWKVGTWISGHYHLRVNCPALLTV------------NDXXXXXXXXXXXXXXXFRFQQ 212
V+WKVG+W+SG YHL V+CPA+L RF Q
Sbjct: 157 RVKWKVGSWVSGSYHLFVSCPAMLASAGPGGVGPMPLGGASAAVVNGTGAGAVASLRFTQ 216
Query: 213 AAACAVDV 220
C+V+V
Sbjct: 217 PTGCSVEV 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,885,335
Number of extensions: 239346
Number of successful extensions: 487
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 7
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)