Os02g0538700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0538700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Harpin-induced 1 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 302.52 | 0.817 | 3.49 | -1.74 | 0.561 | 0.939 | -2.24 | -6.25 | -0.129 | 17.8 | 1005 | 6037 | -- | -- |
| 334.77 | 0.852 | 3.44 | -1.6 | 0.534 | 0.644 | -2.15 | -- | -0.137 | 17.8 | 1009 | 6830 | -- | -- |
| 314.78 | 0.826 | 3.5 | -1.72 | 0.551 | 0.945 | -- | -6.19 | -0.137 | 17.9 | 1005 | 5996 | -- | -- |
| 346.56 | 0.867 | 3.46 | -1.55 | 0.558 | 0.544 | -- | -- | -0.173 | 17.8 | 1010 | 6916 | -- | -- |
| 330.43 | 0.847 | 3.49 | -1.75 | -- | 0.962 | -- | -6.25 | -0.152 | -- | 1005 | 6009 | -- | -- |
| 339.17 | 0.863 | 3.46 | -1.48 | 0.577 | -- | -2.23 | -- | -0.206 | 17.7 | -- | -- | -- | -- |
| 351.39 | 0.878 | 3.47 | -1.47 | 0.565 | -- | -- | -- | -0.215 | 17.8 | -- | -- | -- | -- |
| 363.4 | 0.888 | 3.45 | -1.56 | -- | 0.529 | -- | -- | -0.173 | -- | 1009 | 6261 | -- | -- |
| 407.45 | 0.945 | 3.44 | -- | 0.599 | -0.229 | -- | -- | -0.0977 | 17.7 | 1008 | 6831 | -- | -- |
| 367.93 | 0.896 | 3.46 | -1.49 | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
| 408.41 | 0.945 | 3.43 | -- | 0.588 | -- | -- | -- | -0.0516 | 17.7 | -- | -- | -- | -- |
| 422.82 | 0.958 | 3.39 | -- | -- | -0.39 | -- | -- | -0.0457 | -- | 1016 | 13850 | -- | -- |
| 426.35 | 0.964 | 3.42 | -- | -- | -- | -- | -- | -0.0635 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 305.72 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 2 | 305.72 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 2 |
| 9 | 306.20 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 21 | 306.36 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 22 | 306.44 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 23 | 306.59 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 24 | 306.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 25 | 306.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 26 | 306.72 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 44 | 307.24 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 53 | 307.26 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 65 | 307.39 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 12 | 13 |
| 67 | 307.43 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 6 | NA |
| 76 | 307.48 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 90 | 307.52 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 12 | 20 |
| 92 | 307.53 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 100 | 307.55 | atmosphere | 1005.0 | 4320 | < th | dose dependent | sin | 17 | NA |
| 102 | 307.55 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 122 | 307.58 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 139 | 307.59 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 156 | 307.61 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 13 | 3 |
| 163 | 307.61 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 20 | 20 |
| 217 | 307.66 | atmosphere | 1005.0 | 4320 | < th | dose dependent | no | NA | NA |
| 245 | 307.68 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 21 | 18 |
| 249 | 307.69 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 377 | 307.84 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 20 | 12 |
| 388 | 307.85 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 17 | 15 |
| 406 | 307.87 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 418 | 307.88 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 574 | 308.01 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 1 | 4 |
| 575 | 308.01 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 24 | 6 |
| 615 | 308.06 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 617 | 308.06 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 24 | 6 |
| 634 | 308.09 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 682 | 308.13 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 704 | 308.16 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 20 | 17 |
| 732 | 308.20 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 753 | 308.22 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 20 | 12 |
| 760 | 308.23 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 773 | 308.24 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 776 | 308.24 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 909 | 308.33 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 981 | 308.39 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 15 | 6 |