Os08g0102700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os08g0102700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 411.64 | 0.953 | 9.08 | -6.06 | 2.93 | 3.11 | 1.23 | -3.38 | -0.825 | 22.5 | 21.52 | 1320 | -- | -- |
| 416.11 | 0.95 | 8.94 | -5.18 | 2.91 | 2.99 | 0.772 | -- | -0.49 | 22.4 | 21.02 | 2640 | -- | -- |
| 417.35 | 0.951 | 9.08 | -6.1 | 2.84 | 3.18 | -- | -3.44 | -0.824 | 22.4 | 21.82 | 1256 | -- | -- |
| 419.19 | 0.954 | 8.96 | -5.2 | 2.84 | 2.9 | -- | -- | -0.523 | 22.4 | 21.4 | 2635 | -- | -- |
| 825.17 | 1.34 | 8.99 | -6.13 | -- | 4.08 | -- | -3.71 | -0.554 | -- | 23.9 | 2309 | -- | -- |
| 691.11 | 1.23 | 8.82 | -4.05 | 3.16 | -- | 1.36 | -- | 0.109 | 22.8 | -- | -- | -- | -- |
| 698.83 | 1.24 | 8.82 | -4.11 | 3.15 | -- | -- | -- | 0.105 | 22.8 | -- | -- | -- | -- |
| 724.56 | 1.25 | 8.92 | -5.31 | -- | 4.52 | -- | -- | -0.681 | -- | 22.06 | 891 | -- | -- |
| 1039.8 | 1.5 | 8.74 | -- | 2.86 | 1.75 | -- | -- | 0.458 | 22.5 | 25.33 | 1177 | -- | -- |
| 1313.64 | 1.69 | 8.74 | -4.04 | -- | -- | -- | -- | 0.124 | -- | -- | -- | -- | -- |
| 1143.03 | 1.58 | 8.72 | -- | 3.12 | -- | -- | -- | 0.563 | 22.7 | -- | -- | -- | -- |
| 1405.24 | 1.75 | 8.7 | -- | -- | 3.34 | -- | -- | 0.288 | -- | 24.2 | 889 | -- | -- |
| 1744.52 | 1.95 | 8.64 | -- | -- | -- | -- | -- | 0.573 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 401.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 3 | 403.48 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 20 |
| 6 | 403.98 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 7 | 403.99 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 13 | 405.00 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 16 | 405.53 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 18 | 405.63 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 20 | 405.72 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 21 | 405.76 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 36 | 407.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 38 | 407.09 | wind | 5 | 43200 | > th | dose independent | sin | 3 | NA |
| 39 | 407.10 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 44 | 407.39 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 45 | 407.41 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 48 | 407.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 65 | 408.37 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 74 | 408.89 | wind | 5 | 43200 | > th | dose dependent | sin | 3 | NA |
| 97 | 410.13 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 131 | 411.82 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 159 | 412.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 189 | 413.29 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 258 | 414.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 264 | 414.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 265 | 414.61 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 279 | 414.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 289 | 414.78 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 290 | 414.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 292 | 414.82 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 342 | 415.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 367 | 415.99 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 380 | 416.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 387 | 416.23 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 390 | 416.26 | wind | 5 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 396 | 416.33 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 397 | 416.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 399 | 416.34 | temperature | 20 | 1440 | > th | dose dependent | sin | 2 | NA |
| 416 | 416.55 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 424 | 416.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 457 | 416.99 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 486 | 417.16 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 487 | 417.18 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 495 | 417.30 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 505 | 417.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 520 | 417.55 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 563 | 418.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 566 | 418.10 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 578 | 418.32 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 649 | 419.21 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 656 | 419.33 | wind | 5 | 43200 | < th | dose independent | no | NA | NA |
| 659 | 419.35 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 707 | 419.87 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 709 | 419.87 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 729 | 420.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 738 | 420.21 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 872 | 421.39 | wind | 5 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 915 | 421.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 919 | 421.71 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 947 | 421.93 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 968 | 422.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 992 | 422.29 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 1 |