BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0102700 Os08g0102700|AK067526
(227 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0102700 Harpin-induced 1 domain containing protein 346 6e-96
Os04g0685400 Harpin-induced 1 domain containing protein 210 7e-55
Os12g0159600 Harpin-induced 1 domain containing protein 165 2e-41
Os11g0157200 Harpin-induced 1 domain containing protein 163 1e-40
Os02g0538700 Harpin-induced 1 domain containing protein 143 9e-35
Os04g0416700 Harpin-induced 1 domain containing protein 133 9e-32
Os05g0367900 Harpin-induced 1 domain containing protein 67 1e-11
>Os08g0102700 Harpin-induced 1 domain containing protein
Length = 227
Score = 346 bits (888), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 175/227 (77%), Positives = 175/227 (77%)
Query: 1 MSIKHCEQHKDCERQRLYRRCCAAIFGXXXXXXXXXXXXXXXXRPTKPRFYLNDLTVVCL 60
MSIKHCEQHKDCERQRLYRRCCAAIFG RPTKPRFYLNDLTVVCL
Sbjct: 1 MSIKHCEQHKDCERQRLYRRCCAAIFGILLLLLLIVLIVWLILRPTKPRFYLNDLTVVCL 60
Query: 61 NVXXXXXXXXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPT 120
NV LTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPT
Sbjct: 61 NVTTGGSYAGATASSGYFSFLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPT 120
Query: 121 SLPPVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAF 180
SLPPVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAF
Sbjct: 121 SLPPVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAF 180
Query: 181 ITGHYHLRVRCPALLIVNDXXXXXXXXXXXXXXXXXXQRAAACVVDV 227
ITGHYHLRVRCPALLIVND QRAAACVVDV
Sbjct: 181 ITGHYHLRVRCPALLIVNDGRGSYGSNSGGGNGYFRFQRAAACVVDV 227
>Os04g0685400 Harpin-induced 1 domain containing protein
Length = 220
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 141/228 (61%), Gaps = 14/228 (6%)
Query: 3 IKHCEQHK--DCERQRLYRRCCAAIFGXXXXXXXXXXXXXXXXRPTKPRFYLNDLTVVCL 60
IK C HK +CE+++++RR C A+ RP KPRFYL DL+V+CL
Sbjct: 4 IKDCGGHKGCECEKEKVHRRLCWALVALVLLTLFIVLVVWLALRPHKPRFYLQDLSVLCL 63
Query: 61 NVXXXXXXXXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPT 120
NV L TMQ T+AARN N RVG+YYD+ DVYA+YK + ITVPT
Sbjct: 64 NVTPPASAY-----------LFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPT 112
Query: 121 SLPPVYQGHPDLTVWSPFL-SGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGA 179
LP YQGH D +VWSPFL S ++V LPP LAV++ QDETAGY+LV IR+DGW+R+K G
Sbjct: 113 RLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGT 172
Query: 180 FITGHYHLRVRCPALLIVNDXXXXXXXXXXXXXXXXXXQRAAACVVDV 227
+I+GHYHLRV CPALL VND Q+AAAC VDV
Sbjct: 173 WISGHYHLRVNCPALLTVNDGKGSYGVNYGGGDGYFRFQQAAACAVDV 220
>Os12g0159600 Harpin-induced 1 domain containing protein
Length = 212
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 116/193 (60%), Gaps = 8/193 (4%)
Query: 4 KHCEQHKDCERQRLYRRCCAAIFGXXXXXXXXXXXXXXXXRPTKPRFYLNDLTVVCLNVX 63
K C +H D + ++ RR + RPT PRFYL D T+ L++
Sbjct: 3 KDCGKHGDDDFRQGCRRFITVLVVLAILVGIIALIVYLVLRPTHPRFYLQDATLRQLDLS 62
Query: 64 XXXXXXXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLP 123
L+ T+Q T+A+RN N+RVG+YYDR DVYA YK +ITV SLP
Sbjct: 63 NSSSTAGGV--------LSTTIQVTVASRNPNDRVGVYYDRLDVYASYKYQQITVAASLP 114
Query: 124 PVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAFITG 183
PVYQGH D+ VWSP L+G +V PYLA +I+QD AGYL++ +++DG +R+K G++I+G
Sbjct: 115 PVYQGHGDVDVWSPVLAGPSVPFAPYLADAISQDCQAGYLILQVKIDGRVRWKVGSWISG 174
Query: 184 HYHLRVRCPALLI 196
HYHL V CPA L+
Sbjct: 175 HYHLFVTCPAFLV 187
>Os11g0157200 Harpin-induced 1 domain containing protein
Length = 210
Score = 163 bits (412), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 113/195 (57%), Gaps = 10/195 (5%)
Query: 4 KHCEQHKDCERQRLYRRCCAAIFGXXXXXXXXXXXXXXXXRPTKPRFYLNDLTVVCLNVX 63
K C H D + ++ RR +FG RPT PRF+L D T+ L++
Sbjct: 3 KDCGNHGDDDIRQACRRLLTILFGLALIVAIIALIVYLVLRPTHPRFFLQDATLRQLDLS 62
Query: 64 XXXXXXXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLP 123
L+ +Q T+A+RN N+RVG+YYDR DVYA YK +IT+ SLP
Sbjct: 63 NSSTSGV----------LSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLP 112
Query: 124 PVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAFITG 183
PVYQGH D+ VWSP LSG +V PYL ++ +D A YL++ +++DG +R+K G++I+G
Sbjct: 113 PVYQGHGDVDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISG 172
Query: 184 HYHLRVRCPALLIVN 198
HYHL V CPA I +
Sbjct: 173 HYHLFVTCPAFFIAS 187
>Os02g0538700 Harpin-induced 1 domain containing protein
Length = 224
Score = 143 bits (361), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 109/193 (56%), Gaps = 18/193 (9%)
Query: 7 EQHKDCERQRLYRRCC----AAIFGXXXXXXXXXXXXXXXXRPTKPRFYLNDLTVVCLNV 62
+ K +R+ RRCC A I RP+KP FYL DL + +++
Sbjct: 2 SKEKHHKREHHLRRCCGGMAACILALVLVVGFIALVVYLALRPSKPSFYLQDLQLRSVDL 61
Query: 63 XXXXXXXXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSL 122
L+ T Q TLA+RN N+ VG++Y R DV+ Y+ +TVP SL
Sbjct: 62 GDPS--------------LSATAQVTLASRNPNDHVGVHYRRLDVFVTYRDEPVTVPVSL 107
Query: 123 PPVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAFIT 182
PP YQGH D+T+WSP LSG +V + ++A ++ QD AGY+ + ++VDG +++K G++++
Sbjct: 108 PPTYQGHRDVTIWSPVLSGESVPVAGFVADALRQDVAAGYVALQVKVDGRVKWKVGSWVS 167
Query: 183 GHYHLRVRCPALL 195
G YHL V CPA+L
Sbjct: 168 GSYHLFVSCPAML 180
>Os04g0416700 Harpin-induced 1 domain containing protein
Length = 220
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 105/187 (56%), Gaps = 18/187 (9%)
Query: 13 ERQRLYRRCC----AAIFGXXXXXXXXXXXXXXXXRPTKPRFYLNDLTVVCLNVXXXXXX 68
R + RRCC A I P+KP FYL D+ + +++
Sbjct: 7 HRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNIDLSDPA-- 64
Query: 69 XXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLPPVYQG 128
+++ +Q T+A+RN N+RVG+YY V+ Y+ ITVP LP +YQG
Sbjct: 65 ------------ISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQG 112
Query: 129 HPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAFITGHYHLR 188
H D++VWSP +SG +V + Y+A ++ QD AGY+L+ ++VDG +++K G++++G YHL
Sbjct: 113 HKDVSVWSPVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLF 172
Query: 189 VRCPALL 195
V CPALL
Sbjct: 173 VTCPALL 179
>Os05g0367900 Harpin-induced 1 domain containing protein
Length = 260
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Query: 44 RPTKPRFYLNDLTVVCLNVXXXXXXXXXXXXXXXXXXLTVTMQTTLAARNGNERVGIYYD 103
RP++P F + + V L++ L + Q TL RN NER YD
Sbjct: 79 RPSRPAFAVTSVAVYSLSLNGTGTGTGAVAGGPAT--LAASFQLTLVIRNPNERSAARYD 136
Query: 104 RADVYAEYKGLRITVPTSLPPVYQGHPDLTVWSPFLSGNNVQLP----PYLAVSITQDET 159
R Y Y+G IT P +PP+ Q +P L P P A ++ D +
Sbjct: 137 RLAAYVAYRGEPITAPAPMPPLVQDADSAVAVAPVLGAGAAAPPVPVSPDTAAALATDVS 196
Query: 160 AGYLLVTIRVDGWIRYKAGAFITGHYHLRVRC 191
G + + + V G +R+ +G F +G + + RC
Sbjct: 197 YGVVALRVVVLGRVRFVSGPFRSGWHSMYARC 228
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.140 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,127,957
Number of extensions: 200943
Number of successful extensions: 476
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 8
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)