Os11g0157200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os11g0157200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.36 | 0.528 | 12.4 | -2.99 | 1.06 | 2.33 | -0.313 | -2.16 | -0.46 | 22.4 | 20.19 | 1385 | -- | -- |
| 127.89 | 0.527 | 12.4 | -2.8 | 1.14 | 2.5 | -0.626 | -- | -0.367 | 22.3 | 18.15 | 5671 | -- | -- |
| 126.74 | 0.524 | 12.4 | -3 | 1.06 | 2.33 | -- | -2.22 | -0.464 | 22.4 | 20.18 | 1384 | -- | -- |
| 126.95 | 0.525 | 12.4 | -2.94 | 1.18 | 2.72 | -- | -- | -0.439 | 22.9 | 16 | 6027 | -- | -- |
| 147.58 | 0.566 | 12.4 | -2.87 | -- | 3.26 | -- | -1.92 | -0.441 | -- | 16.9 | 897 | -- | -- |
| 281.66 | 0.787 | 12.2 | -1.53 | 1.18 | -- | -0.125 | -- | 0.237 | 23 | -- | -- | -- | -- |
| 281.72 | 0.786 | 12.2 | -1.53 | 1.18 | -- | -- | -- | 0.237 | 23 | -- | -- | -- | -- |
| 150.6 | 0.572 | 12.3 | -2.5 | -- | 3.44 | -- | -- | -0.349 | -- | 16.12 | 907 | -- | -- |
| 263.58 | 0.756 | 12.3 | -- | 0.983 | 1.47 | -- | -- | 0.164 | 22.5 | 22.17 | 2584 | -- | -- |
| 368.53 | 0.897 | 12.2 | -1.5 | -- | -- | -- | -- | 0.246 | -- | -- | -- | -- | -- |
| 343.41 | 0.867 | 12.2 | -- | 1.17 | -- | -- | -- | 0.408 | 22.9 | -- | -- | -- | -- |
| 299.4 | 0.806 | 12.3 | -- | -- | 2.69 | -- | -- | 0.0683 | -- | 10.76 | 862 | -- | -- |
| 428.16 | 0.966 | 12.2 | -- | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 19 |
| 26 | 126.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 61 | 126.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 68 | 126.57 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 84 | 126.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 92 | 126.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 93 | 126.90 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 95 | 126.93 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 98 | 126.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 105 | 127.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 139 | 127.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 141 | 127.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 15 |
| 143 | 127.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 158 | 127.70 | temperature | 20 | 1440 | > th | dose dependent | sin | 1 | NA |
| 191 | 127.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 193 | 128.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 208 | 128.11 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 12 |
| 266 | 128.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 282 | 128.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 283 | 128.64 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 341 | 129.03 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 387 | 129.32 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 394 | 129.35 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 398 | 129.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 455 | 129.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 481 | 129.69 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 484 | 129.70 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 535 | 129.87 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 554 | 129.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 559 | 130.00 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 578 | 130.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 622 | 130.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 667 | 130.49 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 670 | 130.50 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 9 |
| 675 | 130.52 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 694 | 130.60 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 711 | 130.61 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 728 | 130.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 743 | 130.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 766 | 130.79 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 771 | 130.80 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 8 |
| 780 | 130.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 820 | 130.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 18 |
| 847 | 131.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 894 | 131.21 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 926 | 131.38 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 10 |