BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0157200 Os11g0157200|AK070326
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0157200 Harpin-induced 1 domain containing protein 387 e-108
Os12g0159600 Harpin-induced 1 domain containing protein 335 1e-92
Os04g0416700 Harpin-induced 1 domain containing protein 194 4e-50
Os02g0538700 Harpin-induced 1 domain containing protein 190 5e-49
Os08g0102700 Harpin-induced 1 domain containing protein 162 2e-40
Os04g0685400 Harpin-induced 1 domain containing protein 161 3e-40
Os05g0367900 Harpin-induced 1 domain containing protein 80 1e-15
Os02g0100600 Harpin-induced 1 domain containing protein 70 1e-12
>Os11g0157200 Harpin-induced 1 domain containing protein
Length = 210
Score = 387 bits (995), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/210 (90%), Positives = 190/210 (90%)
Query: 1 MGKDCGNHGDDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATLRQLD 60
MGKDCGNHGDDDIRQACRRLLT RPTHPRFFLQDATLRQLD
Sbjct: 1 MGKDCGNHGDDDIRQACRRLLTILFGLALIVAIIALIVYLVLRPTHPRFFLQDATLRQLD 60
Query: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD
Sbjct: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
Query: 121 VDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVTC 180
VDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVTC
Sbjct: 121 VDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVTC 180
Query: 181 PAFFIASGGNGYPGANGLKFQTATYCRVEV 210
PAFFIASGGNGYPGANGLKFQTATYCRVEV
Sbjct: 181 PAFFIASGGNGYPGANGLKFQTATYCRVEV 210
>Os12g0159600 Harpin-induced 1 domain containing protein
Length = 212
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 160/212 (75%), Positives = 174/212 (82%), Gaps = 2/212 (0%)
Query: 1 MGKDCGNHGDDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATLRQLD 60
MGKDCG HGDDD RQ CRR +T RPTHPRF+LQDATLRQLD
Sbjct: 1 MGKDCGKHGDDDFRQGCRRFITVLVVLAILVGIIALIVYLVLRPTHPRFYLQDATLRQLD 60
Query: 61 LSNSSTS--GVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGH 118
LSNSS++ GVLST +QVTVASRNPNDRVGVYYDRLDVYASYKYQQIT+AASLPPVYQGH
Sbjct: 61 LSNSSSTAGGVLSTTIQVTVASRNPNDRVGVYYDRLDVYASYKYQQITVAASLPPVYQGH 120
Query: 119 GDVDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFV 178
GDVDVWSPVL+GP VPFAPYL DA+++D A YLILQVKIDGRVRWKVGSWISGHYHLFV
Sbjct: 121 GDVDVWSPVLAGPSVPFAPYLADAISQDCQAGYLILQVKIDGRVRWKVGSWISGHYHLFV 180
Query: 179 TCPAFFIASGGNGYPGANGLKFQTATYCRVEV 210
TCPAF + +GGNG PGA+G +FQT TYC VEV
Sbjct: 181 TCPAFLVTAGGNGSPGASGFRFQTTTYCHVEV 212
>Os04g0416700 Harpin-induced 1 domain containing protein
Length = 220
Score = 194 bits (493), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 122/190 (64%), Gaps = 5/190 (2%)
Query: 1 MGKDCGNHGDDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATLRQLD 60
MGKD +H D +R+ C + P+ P F+LQD LR +D
Sbjct: 1 MGKD-KHHRDWILRRCCGSIAACILTLAVLVGFIVLVIYLAIHPSKPSFYLQDVQLRNID 59
Query: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
LS+ + +S LQVT+ASRNPNDRVGVYY L V+ +Y+ + IT+ LP +YQGH D
Sbjct: 60 LSDPA----ISLNLQVTIASRNPNDRVGVYYKTLHVFTTYREEPITVPVELPAIYQGHKD 115
Query: 121 VDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVTC 180
V VWSPV+SG VP Y+ DA+ +D+AA Y++L VK+DGRV+WKVGSW+SG YHLFVTC
Sbjct: 116 VSVWSPVMSGESVPVGQYVADAMRQDIAAGYVLLHVKVDGRVKWKVGSWVSGGYHLFVTC 175
Query: 181 PAFFIASGGN 190
PA ASGGN
Sbjct: 176 PALLAASGGN 185
>Os02g0538700 Harpin-induced 1 domain containing protein
Length = 224
Score = 190 bits (483), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 130/228 (57%), Gaps = 22/228 (9%)
Query: 1 MGKDCGNHGDDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATLRQLD 60
M K+ + + +R+ C + RP+ P F+LQD LR +D
Sbjct: 1 MSKEKHHKREHHLRRCCGGMAACILALVLVVGFIALVVYLALRPSKPSFYLQDLQLRSVD 60
Query: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
L + S LS QVT+ASRNPND VGV+Y RLDV+ +Y+ + +T+ SLPP YQGH D
Sbjct: 61 LGDPS----LSATAQVTLASRNPNDHVGVHYRRLDVFVTYRDEPVTVPVSLPPTYQGHRD 116
Query: 121 VDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVTC 180
V +WSPVLSG VP A ++ DAL +DVAA Y+ LQVK+DGRV+WKVGSW+SG YHLFV+C
Sbjct: 117 VTIWSPVLSGESVPVAGFVADALRQDVAAGYVALQVKVDGRVKWKVGSWVSGSYHLFVSC 176
Query: 181 PAFFIASG------------------GNGYPGANGLKFQTATYCRVEV 210
PA ++G G G L+F T C VEV
Sbjct: 177 PAMLASAGPGGVGPMPLGGASAAVVNGTGAGAVASLRFTQPTGCSVEV 224
>Os08g0102700 Harpin-induced 1 domain containing protein
Length = 227
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 126/224 (56%), Gaps = 16/224 (7%)
Query: 3 KDCGNHGDDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATLRQLDLS 62
K C H D + ++ RR RPT PRF+L D T+ L+++
Sbjct: 4 KHCEQHKDCERQRLYRRCCAAIFGILLLLLLIVLIVWLILRPTKPRFYLNDLTVVCLNVT 63
Query: 63 N-------SSTSG---VLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLP 112
+++SG L+ +Q T+A+RN N+RVG+YYDR DVYA YK +IT+ SLP
Sbjct: 64 TGGSYAGATASSGYFSFLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLP 123
Query: 113 PVYQGHGDVDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISG 172
PVYQGH D+ VWSP LSG +V PYL ++ +D A YL++ +++DG +R+K G++I+G
Sbjct: 124 PVYQGHPDLTVWSPFLSGNNVQLPPYLAVSITQDETAGYLLVTIRVDGWIRYKAGAFITG 183
Query: 173 HYHLFVTCPAFFIASGGN------GYPGANGLKFQTATYCRVEV 210
HYHL V CPA I + G G +FQ A C V+V
Sbjct: 184 HYHLRVRCPALLIVNDGRGSYGSNSGGGNGYFRFQRAAACVVDV 227
>Os04g0685400 Harpin-induced 1 domain containing protein
Length = 220
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 122/217 (56%), Gaps = 10/217 (4%)
Query: 3 KDCGNHG--DDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATLRQLD 60
KDCG H + + + RRL RP PRF+LQD ++ L+
Sbjct: 5 KDCGGHKGCECEKEKVHRRLCWALVALVLLTLFIVLVVWLALRPHKPRFYLQDLSVLCLN 64
Query: 61 LSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVYQGHGD 120
++ + S L T +Q TVA+RN N RVGVYYD++DVYA YK IT+ LP YQGH D
Sbjct: 65 VTPPA-SAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQGHYD 123
Query: 121 VDVWSPVLSGPD-VPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGHYHLFVT 179
VWSP L D V P L ALA+D A Y+++ +++DG VRWKVG+WISGHYHL V
Sbjct: 124 QSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHLRVN 183
Query: 180 CPAFFIASGGNG-----YPGANG-LKFQTATYCRVEV 210
CPA + G G Y G +G +FQ A C V+V
Sbjct: 184 CPALLTVNDGKGSYGVNYGGGDGYFRFQQAAACAVDV 220
>Os05g0367900 Harpin-induced 1 domain containing protein
Length = 260
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 12/150 (8%)
Query: 43 RPTHPRFFLQDATLRQLDLSNSSTS--------GVLSTALQVTVASRNPNDRVGVYYDRL 94
RP+ P F + + L L+ + T L+ + Q+T+ RNPN+R YDRL
Sbjct: 79 RPSRPAFAVTSVAVYSLSLNGTGTGTGAVAGGPATLAASFQLTLVIRNPNERSAARYDRL 138
Query: 95 DVYASYKYQQITLAASLPPVYQGHGDVDVWSPVL----SGPDVPFAPYLGDALAKDVAAE 150
Y +Y+ + IT A +PP+ Q +PVL + P VP +P ALA DV+
Sbjct: 139 AAYVAYRGEPITAPAPMPPLVQDADSAVAVAPVLGAGAAAPPVPVSPDTAAALATDVSYG 198
Query: 151 YLILQVKIDGRVRWKVGSWISGHYHLFVTC 180
+ L+V + GRVR+ G + SG + ++ C
Sbjct: 199 VVALRVVVLGRVRFVSGPFRSGWHSMYARC 228
>Os02g0100600 Harpin-induced 1 domain containing protein
Length = 214
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 27/187 (14%)
Query: 3 KDCGN------HGDDDIRQACRRLLTXXXXXXXXXXXXXXXXXXXXRPTHPRFFLQDATL 56
+DC + H R+ RR L RP+ PRF L AT
Sbjct: 10 RDCSSYKHQHHHRAIHGRRISRRTLVVASSAVVSLASLSLILWLVLRPSPPRFSLLAAT- 68
Query: 57 RQLDLSNSSTSGVLSTALQVTVASRNPNDRVGVYYDRLDVYASYKYQQITLAASLPPVY- 115
+N S S V A+ A+RNPN V YDRL ASY +T + L P +
Sbjct: 69 ---TTANDSASVV---AINAAFAARNPNSHTAVLYDRLQASASYAGLPLTAPSPLIPPFL 122
Query: 116 --QGHGDVDVWSPVLSGPDVPFAPYLGDALAKDVAAEYLILQVKIDGRVRWKVGSWISGH 173
QG GD + + + S P A VA +L+++++G++RWKV +W++G
Sbjct: 123 PQQGQGDAMLSASLTSPPA-----------AAAVAGGRALLRLRVEGQLRWKVAAWVTGR 171
Query: 174 YHLFVTC 180
+ L V C
Sbjct: 172 HALTVDC 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,372,563
Number of extensions: 276775
Number of successful extensions: 702
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 695
Number of HSP's successfully gapped: 9
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)