Os05g0367900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os05g0367900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.48 | 0.447 | 9.35 | 0.484 | 0.973 | 0.269 | 0.343 | 2.81 | 0.5 | 20 | 1001 | 3813 | -- | -- |
| 95.51 | 0.455 | 9.32 | 0.596 | 0.97 | 0.677 | 0.317 | -- | 0.511 | 20 | 1000 | 2010 | -- | -- |
| 90.83 | 0.444 | 9.34 | 0.475 | 0.973 | 0.267 | -- | 2.81 | 0.501 | 20 | 1001 | 3821 | -- | -- |
| 95.89 | 0.456 | 9.32 | 0.581 | 0.964 | 0.669 | -- | -- | 0.493 | 20 | 1000 | 2010 | -- | -- |
| 142.46 | 0.556 | 9.32 | 0.475 | -- | 0.293 | -- | 2.79 | 0.489 | -- | 1002 | 4075 | -- | -- |
| 103.75 | 0.478 | 9.31 | 0.492 | 0.966 | -- | 0.332 | -- | 0.536 | 20 | -- | -- | -- | -- |
| 104.08 | 0.478 | 9.31 | 0.483 | 0.966 | -- | -- | -- | 0.536 | 20 | -- | -- | -- | -- |
| 145.84 | 0.562 | 9.29 | 0.6 | -- | 0.658 | -- | -- | 0.497 | -- | 999.7 | 10153 | -- | -- |
| 104.39 | 0.476 | 9.33 | -- | 0.966 | 0.568 | -- | -- | 0.437 | 20 | 999.7 | 2034 | -- | -- |
| 155.04 | 0.582 | 9.29 | 0.474 | -- | -- | -- | -- | 0.524 | -- | -- | -- | -- | -- |
| 110.23 | 0.491 | 9.32 | -- | 0.963 | -- | -- | -- | 0.482 | 20 | -- | -- | -- | -- |
| 154.59 | 0.579 | 9.31 | -- | -- | 0.524 | -- | -- | 0.414 | -- | 1000 | 8802 | -- | -- |
| 160.96 | 0.592 | 9.3 | -- | -- | -- | -- | -- | 0.471 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.70 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 2 | 88.73 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 4 | 88.95 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 6 | 89.01 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 79 | 89.78 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 88 | 89.83 | atmosphere | 1000 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 91 | 89.85 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 103 | 89.89 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 17 |
| 105 | 89.90 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 9 |
| 133 | 90.04 | atmosphere | 1000 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 134 | 90.04 | atmosphere | 1000 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 155 | 90.12 | radiation | 10 | 90 | < th | dose dependent | rect. | 23 | 14 |
| 176 | 90.19 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 291 | 90.49 | atmosphere | 1000 | 4320 | > th | dose independent | sin | 17 | NA |
| 327 | 90.56 | atmosphere | 1000 | 4320 | < th | dose independent | sin | 17 | NA |
| 432 | 90.75 | atmosphere | 1000 | 1440 | > th | dose independent | sin | 0 | NA |
| 453 | 90.78 | atmosphere | 1000 | 1440 | < th | dose independent | sin | 0 | NA |
| 459 | 90.78 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 21 |
| 460 | 90.78 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 548 | 90.89 | atmosphere | 1000 | 4320 | < th | dose dependent | sin | 17 | NA |
| 959 | 91.31 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 23 | 7 |