Os12g0159600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os12g0159600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.11 | 0.355 | 11.8 | -1.56 | 1.38 | -0.845 | 1.02 | -0.525 | -0.214 | 3.14 | 24.05 | 9 | -- | -- |
| 57.44 | 0.356 | 11.8 | -1.63 | 1.37 | -0.79 | 0.852 | -- | -0.228 | 3.15 | 24.06 | 10 | -- | -- |
| 59.77 | 0.363 | 11.8 | -1.66 | 1.37 | -0.778 | -- | 0.134 | -0.238 | 3.16 | 24.1 | 10 | -- | -- |
| 59.81 | 0.363 | 11.8 | -1.65 | 1.37 | -0.792 | -- | -- | -0.235 | 3.15 | 24.1 | 10 | -- | -- |
| 156.76 | 0.586 | 11.8 | -1.46 | -- | 0.198 | -- | 1.9 | -0.0879 | -- | 17.9 | 25 | -- | -- |
| 66.32 | 0.382 | 11.8 | -1.45 | 1.26 | -- | 0.875 | -- | -0.1 | 3.38 | -- | -- | -- | -- |
| 68.74 | 0.388 | 11.8 | -1.47 | 1.26 | -- | -- | -- | -0.105 | 3.38 | -- | -- | -- | -- |
| 144.15 | 0.559 | 11.8 | -1.22 | -- | 1 | -- | -- | 0.0593 | -- | 261.8 | 120 | -- | -- |
| 125.15 | 0.524 | 11.8 | -- | 1.26 | -0.162 | -- | -- | 0.0359 | 3.33 | 24.1 | 10 | -- | -- |
| 158.55 | 0.588 | 11.8 | -1.41 | -- | -- | -- | -- | -0.072 | -- | -- | -- | -- | -- |
| 125.56 | 0.524 | 11.8 | -- | 1.23 | -- | -- | -- | 0.0582 | 3.38 | -- | -- | -- | -- |
| 180.91 | 0.626 | 11.7 | -- | -- | 1.41 | -- | -- | 0.239 | -- | 41.74 | 121 | -- | -- |
| 211.35 | 0.679 | 11.8 | -- | -- | -- | -- | -- | 0.085 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 7 | 54.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 8 | 54.65 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 9 | 54.67 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 10 | 54.84 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 11 | 54.88 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 19 |
| 13 | 54.92 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 19 | 55.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 22 | 55.04 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 23 | 55.05 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 28 | 55.17 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 30 | 55.17 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 31 | 55.18 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 13 |
| 35 | 55.19 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 48 | 55.26 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 53 | 55.27 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 13 |
| 76 | 55.35 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 19 |
| 117 | 55.50 | wind | 5 | 43200 | > th | dose dependent | sin | 15 | NA |
| 119 | 55.52 | wind | 7 | 43200 | < th | dose independent | sin | 14 | NA |
| 131 | 55.56 | wind | 7 | 43200 | > th | dose independent | sin | 14 | NA |
| 140 | 55.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 146 | 55.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 165 | 55.65 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 175 | 55.69 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 199 | 55.74 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 11 |
| 210 | 55.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 212 | 55.77 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 247 | 55.84 | temperature | 25 | 90 | > th | dose independent | rect. | 15 | 7 |
| 253 | 55.84 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 19 |
| 256 | 55.85 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 10 |
| 309 | 55.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 513 | 56.36 | temperature | 25 | 10 | > th | dose independent | rect. | 15 | 7 |
| 604 | 56.48 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 14 |
| 605 | 56.48 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 18 |
| 614 | 56.49 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 21 |
| 621 | 56.50 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 14 |
| 640 | 56.52 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 657 | 56.53 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 11 |
| 663 | 56.53 | temperature | 10 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 697 | 56.56 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 21 |
| 762 | 56.62 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 825 | 56.66 | temperature | 25 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 881 | 56.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 903 | 56.74 | temperature | 20 | 10 | > th | dose independent | rect. | 16 | 14 |
| 988 | 56.82 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 18 |