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Os04g0685300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.62 (0.0339) R2 : 0.442
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.35 (0.0806) R2dC : 0.339 R2C : 0.306
β3 : -1.36 (0.155) R2dE : 0.0982 R2E : 0.0765
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.284 (0.072) R2dN8 : 0.0249 R2N8 : 0.0301
σ : 0.635
deviance : 185.6
__
_____
C
peak time of C : 0.22
E
wheather : humidity
threshold : 53
memory length : 256
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.85 0.634 9.63 0.00895 1.34 -1.95 0.928 1.05 -0.282 0.163 52 196 -- --
182.06 0.628 9.62 0.046 1.34 -1.76 0.995 -- -0.281 0.137 51.68 195 -- --
185.39 0.634 9.64 -0.0461 1.33 -2.08 -- 1.94 -0.286 0.213 51.79 196 -- --
185.77 0.635 9.62 0.0112 1.34 -1.51 -- -- -0.283 0.254 52.42 254 -- --
292.94 0.797 9.61 -0.0409 -- -1.85 -- 2.52 -0.271 -- 51 454 -- --
209.3 0.678 9.64 0.201 1.32 -- 0.916 -- -0.353 23.3 -- -- -- --
212.85 0.683 9.65 0.162 1.31 -- -- -- -0.357 23.4 -- -- -- --
294.06 0.799 9.59 0.0617 -- -1.04 -- -- -0.253 -- 53.06 527 -- --
185.6 0.635 9.62 -- 1.35 -1.36 -- -- -0.284 0.22 53 256 -- --
320.96 0.837 9.61 0.197 -- -- -- -- -0.344 -- -- -- -- --
213.55 0.684 9.65 -- 1.31 -- -- -- -0.375 23.4 -- -- -- --
290.93 0.794 9.59 -- -- -0.969 -- -- -0.199 -- 55.53 785 -- --
321.98 0.838 9.62 -- -- -- -- -- -0.365 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.38 temperature 10.0 270 > th dose dependent rect. 5 9
13 170.46 temperature 25.0 270 > th dose independent rect. 5 8
19 171.74 atmosphere 1010.0 270 < th dose independent rect. 6 8
23 172.45 humidity 50.0 270 > th dose independent rect. 19 19
31 172.94 humidity 50.0 270 > th dose independent rect. 17 22
36 173.36 temperature 10.0 270 > th dose dependent rect. 19 18
39 173.45 humidity 50.0 270 > th dose independent rect. 9 15
41 173.49 humidity 50.0 90 > th dose independent rect. 19 22
42 173.58 humidity 50.0 270 > th dose independent rect. 5 9
44 173.78 radiation 1.0 270 > th dose independent rect. 5 9
55 173.80 precipitation 0.1 270 < th dose independent rect. 17 22
56 173.80 precipitation 0.1 270 < th dose dependent rect. 17 22
73 174.85 temperature 15.0 10 > th dose dependent rect. 7 9
81 175.18 wind 7.0 270 < th dose independent rect. 19 19
95 175.28 humidity 50.0 10 > th dose independent rect. 20 19
110 175.65 wind 7.0 10 < th dose independent rect. 20 20
115 175.73 wind 3.0 270 > th dose independent rect. 15 2
122 175.89 temperature 10.0 10 > th dose dependent rect. 20 20
125 175.91 temperature 10.0 270 > th dose dependent rect. 14 5
126 175.92 wind 7.0 270 < th dose independent rect. 5 9
130 176.01 atmosphere 995.0 10 > th dose dependent rect. 2 18
131 176.03 wind 3.0 270 > th dose independent rect. 14 4
151 176.42 precipitation 0.1 270 < th dose independent rect. 19 19
152 176.42 precipitation 0.1 270 < th dose dependent rect. 19 19
160 176.55 temperature 10.0 270 > th dose dependent rect. 15 2
165 176.59 temperature 25.0 270 < th dose independent rect. 1 11
169 176.68 wind 7.0 270 < th dose independent rect. 17 22
179 176.85 atmosphere 1010.0 270 < th dose independent rect. 19 18
188 177.04 temperature 25.0 270 > th dose independent rect. 19 19
207 177.32 atmosphere 1010.0 10 < th dose independent rect. 8 8
208 177.34 temperature 20.0 270 > th dose independent rect. 14 5
210 177.36 temperature 25.0 270 > th dose independent rect. 9 2
215 177.44 temperature 15.0 270 > th dose independent rect. 19 19
226 177.52 temperature 25.0 10 > th dose dependent rect. 20 19
229 177.56 atmosphere 995.0 10 > th dose independent rect. 20 20
252 177.86 humidity 50.0 270 > th dose independent rect. 4 23
254 177.88 temperature 15.0 270 > th dose independent rect. 17 22
299 178.33 temperature 10.0 10 > th dose dependent rect. 16 4
312 178.47 precipitation 0.1 270 < th dose independent rect. 5 9
313 178.47 precipitation 0.1 270 < th dose dependent rect. 5 9
314 178.47 temperature 25.0 90 > th dose dependent rect. 20 18
323 178.54 atmosphere 1010.0 270 < th dose independent rect. 8 16
343 178.69 atmosphere 1015.0 270 < th dose dependent rect. 7 6
386 178.99 temperature 10.0 270 > th dose independent rect. 14 5
388 178.99 atmosphere 1010.0 270 < th dose independent rect. 14 5
391 178.99 atmosphere 995.0 270 > th dose independent rect. 19 19
399 179.04 wind 9.0 270 < th dose independent rect. 14 5
406 179.10 atmosphere 995.0 270 > th dose dependent rect. 24 19
409 179.13 temperature 20.0 270 > th dose independent rect. 15 2
416 179.16 atmosphere 995.0 270 > th dose independent rect. 5 9
418 179.16 temperature 10.0 270 > th dose independent rect. 14 15
434 179.30 wind 9.0 270 < th dose independent rect. 14 15
444 179.42 humidity 90.0 270 < th dose independent rect. 15 2
451 179.48 radiation 40.0 270 < th dose independent rect. 15 2
462 179.54 wind 9.0 270 < th dose independent rect. 15 2
463 179.54 temperature 10.0 270 > th dose independent rect. 15 2
465 179.54 atmosphere 1010.0 270 < th dose independent rect. 15 2
476 179.59 atmosphere 1015.0 90 < th dose dependent rect. 20 19
494 179.75 humidity 90.0 270 < th dose independent rect. 6 8
497 179.75 atmosphere 1015.0 10 < th dose dependent rect. 20 18
524 179.93 temperature 25.0 10 > th dose independent rect. 7 9
546 180.04 atmosphere 995.0 270 > th dose independent rect. 18 21
571 180.12 wind 1.0 270 > th dose dependent rect. 15 2
577 180.15 precipitation 0.1 10 < th dose independent rect. 20 20
578 180.15 precipitation 0.1 10 < th dose dependent rect. 20 20
579 180.15 humidity 60.0 270 < th dose dependent rect. 14 22
692 180.74 wind 1.0 270 > th dose dependent rect. 14 4
698 180.77 humidity 60.0 270 < th dose independent rect. 14 21
729 180.89 temperature 15.0 10 > th dose independent rect. 20 20
736 180.92 precipitation 0.1 270 < th dose independent rect. 14 5
738 180.92 precipitation 0.1 270 < th dose dependent rect. 14 5
747 180.94 atmosphere 1015.0 10 < th dose dependent rect. 8 8
757 180.97 wind 9.0 270 < th dose dependent rect. 6 8
766 181.02 precipitation 0.1 270 < th dose independent rect. 15 2
767 181.02 precipitation 0.1 270 < th dose dependent rect. 15 2
779 181.10 wind 7.0 10 < th dose independent rect. 8 9
786 181.14 temperature 10.0 10 > th dose independent rect. 16 4
788 181.14 atmosphere 1010.0 10 < th dose independent rect. 16 4
790 181.14 radiation 40.0 10 < th dose independent rect. 16 4
796 181.16 radiation 40.0 270 < th dose independent rect. 15 14
801 181.19 wind 9.0 10 < th dose independent rect. 16 4
811 181.23 radiation 40.0 90 < th dose independent rect. 15 5
835 181.33 wind 1.0 10 > th dose independent rect. 16 4
883 181.51 radiation 40.0 90 < th dose independent rect. 3 17
885 181.52 precipitation 0.1 270 < th dose independent rect. 19 6
888 181.52 precipitation 0.1 270 < th dose dependent rect. 19 6
890 181.53 temperature 25.0 270 > th dose independent sin 5 NA
891 181.53 wind 9.0 90 < th dose dependent rect. 20 19
894 181.55 precipitation 0.1 10 < th dose independent rect. 16 4
895 181.55 precipitation 0.1 10 < th dose dependent rect. 16 4
903 181.61 atmosphere 1000.0 10 > th dose independent rect. 2 18
906 181.62 temperature 15.0 1440 > th dose independent rect. 17 4
921 181.66 radiation 30.0 1440 < th dose independent rect. 17 4
928 181.66 temperature 10.0 1440 > th dose independent rect. 21 20
947 181.71 temperature 30.0 90 < th dose dependent rect. 2 10
955 181.74 humidity 50.0 270 > th dose independent sin 10 NA
960 181.75 temperature 30.0 270 < th dose dependent rect. 24 11
970 181.78 temperature 10.0 270 > th dose dependent rect. 14 15
976 181.80 temperature 30.0 10 < th dose dependent rect. 2 10
994 181.85 humidity 50.0 10 > th dose independent rect. 8 8