Os07g0531500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0531500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Harpin-induced 1 domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 572.01 | 1.12 | 5.76 | -1.38 | 1.81 | -1.72 | -0.558 | -9.28 | -0.729 | 23.8 | 21.1 | 1416 | 22.3 | -- |
| 719.54 | 1.25 | 5.54 | 0.525 | 1.66 | -0.923 | -0.627 | -- | -0.601 | 0.0375 | 30.3 | 1555 | 23.2 | -- |
| 571.86 | 1.11 | 5.77 | -1.3 | 1.87 | -1.81 | -- | -9.54 | -0.724 | 23.5 | 21.03 | 1362 | 22.2 | -- |
| 671 | 1.21 | 5.46 | 0.825 | 1.82 | -0.832 | -- | -- | -0.454 | 23.9 | 33 | 39304 | 23.9 | -- |
| 689.81 | 1.22 | 5.66 | -0.789 | -- | -2.41 | -- | -9.48 | -0.532 | -- | 21.1 | 1904 | 22.3 | -- |
| 753.03 | 1.29 | 5.51 | 0.428 | 1.73 | -- | -0.872 | -- | -0.483 | 23.8 | -- | -- | -- | -- |
| 756.33 | 1.29 | 5.51 | 0.462 | 1.73 | -- | -- | -- | -0.48 | 23.9 | -- | -- | -- | -- |
| 756.33 | 1.28 | 5.48 | 0.461 | -- | -1.73 | -- | -- | -0.48 | -- | 6.577 | 1973 | 22.6 | -- |
| 692.19 | 1.23 | 5.47 | -- | 1.96 | -0.879 | -- | -- | -0.256 | 0.0531 | 32.71 | 38588 | 14.3 | -- |
| 944.4 | 1.44 | 5.47 | 0.514 | -- | -- | -- | -- | -0.457 | -- | -- | -- | -- | -- |
| 761.96 | 1.29 | 5.52 | -- | 1.73 | -- | -- | -- | -0.531 | 23.9 | -- | -- | -- | -- |
| 761.96 | 1.29 | 5.49 | -- | -- | -1.73 | -- | -- | -0.532 | -- | 6.784 | 1940 | 22.3 | -- |
| 951.37 | 1.44 | 5.48 | -- | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 542.56 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 2 | 542.98 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 6 | 546.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 9 |
| 19 | 548.83 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 39 | 550.31 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 41 | 550.38 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 81 | 551.35 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 82 | 551.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 86 | 551.43 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 88 | 551.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 104 | 551.87 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 15 | NA |
| 121 | 552.19 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 140 | 552.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 141 | 552.50 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 151 | 552.67 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 5 |
| 153 | 552.67 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 176 | 553.03 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 14 | NA |
| 229 | 553.62 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 260 | 553.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 262 | 553.85 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 301 | 554.12 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 20 |
| 370 | 554.58 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 10 |
| 388 | 554.69 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 416 | 554.81 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 447 | 555.06 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 454 | 555.09 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 578 | 555.88 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 585 | 555.94 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 624 | 556.30 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 10 |
| 648 | 556.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 23 |
| 653 | 556.65 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 699 | 557.11 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 10 | NA |
| 750 | 557.76 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 793 | 558.50 | radiation | 1 | 43200 | < th | dose dependent | sin | 0 | NA |
| 802 | 558.61 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 939 | 559.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 940 | 559.96 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 954 | 560.08 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 959 | 560.11 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 976 | 560.24 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 986 | 560.31 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 8 |