BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0807100 Os03g0807100|011-007-H04
(102 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0807100 Protein of unknown function DUF239, plant doma... 211 6e-56
Os07g0205500 Protein of unknown function DUF239, plant doma... 125 8e-30
Os07g0573400 Protein of unknown function DUF239, plant doma... 120 2e-28
Os01g0547133 Protein of unknown function DUF239, plant doma... 102 4e-23
Os06g0474500 Protein of unknown function DUF239, plant doma... 100 4e-22
Os01g0170500 Protein of unknown function DUF239, plant doma... 93 5e-20
Os05g0169800 Protein of unknown function DUF239, plant doma... 89 6e-19
Os08g0566100 Protein of unknown function DUF239, plant doma... 87 4e-18
Os01g0550900 Protein of unknown function DUF239, plant doma... 80 4e-16
Os01g0550800 Protein of unknown function DUF239, plant doma... 75 1e-14
Os06g0277900 Protein of unknown function DUF239, plant doma... 73 5e-14
Os01g0973100 Protein of unknown function DUF239, plant doma... 71 2e-13
>Os03g0807100 Protein of unknown function DUF239, plant domain containing protein
Length = 102
Score = 211 bits (538), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MTSMLAMFVVALRVPAMAHLLICLGENLSFFVLQHAIAYVQGDKYYGAKATINVWAPKIE 60
MTSMLAMFVVALRVPAMAHLLICLGENLSFFVLQHAIAYVQGDKYYGAKATINVWAPKIE
Sbjct: 1 MTSMLAMFVVALRVPAMAHLLICLGENLSFFVLQHAIAYVQGDKYYGAKATINVWAPKIE 60
Query: 61 QPNEFSLSQLWILGGSFGEDLNSIEAGWQVAIRKKLISCSCS 102
QPNEFSLSQLWILGGSFGEDLNSIEAGWQVAIRKKLISCSCS
Sbjct: 61 QPNEFSLSQLWILGGSFGEDLNSIEAGWQVAIRKKLISCSCS 102
>Os07g0205500 Protein of unknown function DUF239, plant domain containing protein
Length = 408
Score = 125 bits (313), Expect = 8e-30, Method: Composition-based stats.
Identities = 54/58 (93%), Positives = 57/58 (98%)
Query: 34 QHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQVA 91
QHAIAYV+GDKYYGAKATINVW PKI+QPNEFSLSQLWILGGSFGEDLNSIEAGWQV+
Sbjct: 161 QHAIAYVEGDKYYGAKATINVWEPKIQQPNEFSLSQLWILGGSFGEDLNSIEAGWQVS 218
>Os07g0573400 Protein of unknown function DUF239, plant domain containing protein
Length = 430
Score = 120 bits (301), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/58 (89%), Positives = 56/58 (96%)
Query: 34 QHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQVA 91
QHAIAYV+GDKYYGAKATINVW P+IEQ NEFSLSQLWILGGSFG+DLNSIEAGWQV+
Sbjct: 183 QHAIAYVEGDKYYGAKATINVWQPRIEQANEFSLSQLWILGGSFGQDLNSIEAGWQVS 240
>Os01g0547133 Protein of unknown function DUF239, plant domain containing protein
Length = 424
Score = 102 bits (255), Expect = 4e-23, Method: Composition-based stats.
Identities = 40/58 (68%), Positives = 51/58 (87%)
Query: 34 QHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQVA 91
+HA+ YV G++YYGAKA+INVWAPK+ P EFSLSQ+W++ GSFG DLN+IEAGWQV+
Sbjct: 175 EHAVGYVAGEEYYGAKASINVWAPKVSTPEEFSLSQIWVIAGSFGNDLNTIEAGWQVS 232
>Os06g0474500 Protein of unknown function DUF239, plant domain containing protein
Length = 434
Score = 100 bits (248), Expect = 4e-22, Method: Composition-based stats.
Identities = 38/58 (65%), Positives = 50/58 (86%)
Query: 34 QHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQVA 91
+HA+ YV D YYGAKA++NVW+P+I P+EFSLSQ+W++ GSFG DLN+IEAGWQV+
Sbjct: 187 EHAVGYVNNDNYYGAKASVNVWSPRIGDPSEFSLSQIWVISGSFGNDLNTIEAGWQVS 244
>Os01g0170500 Protein of unknown function DUF239, plant domain containing protein
Length = 427
Score = 92.8 bits (229), Expect = 5e-20, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 49/58 (84%)
Query: 34 QHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQVA 91
+HA+ YV GD++YGAKA++NVW+ ++ EFSLSQ+W++ GSFG DLN+IEAGWQV+
Sbjct: 180 EHAVGYVTGDQFYGAKASLNVWSARVATAAEFSLSQIWVISGSFGNDLNTIEAGWQVS 237
>Os05g0169800 Protein of unknown function DUF239, plant domain containing
protein
Length = 79
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 48/58 (82%)
Query: 33 LQHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSFGEDLNSIEAGWQV 90
+QHA+ Y+ G ++YGAKA++NVW K+ P EFSLSQ+W++ GSFG DLN+IEAGWQV
Sbjct: 3 MQHAVGYMSGGQFYGAKASLNVWPAKVASPAEFSLSQIWLISGSFGNDLNTIEAGWQV 60
>Os08g0566100 Protein of unknown function DUF239, plant domain containing protein
Length = 433
Score = 86.7 bits (213), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/59 (69%), Positives = 49/59 (83%), Gaps = 2/59 (3%)
Query: 34 QHAIAYVQGDKYYGAKATINVWAPKIEQPNEFSLSQLWILGGSF-GEDLNSIEAGWQVA 91
+HAIAY + YGA+ATI+VWAP+I++ N FSLSQLWIL GSF G DLNSIEAGWQV+
Sbjct: 175 EHAIAYTAAE-VYGARATISVWAPEIDEANGFSLSQLWILSGSFNGSDLNSIEAGWQVS 232
>Os01g0550900 Protein of unknown function DUF239, plant domain containing protein
Length = 289
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 51/80 (63%), Gaps = 8/80 (10%)
Query: 13 RVPAMAHLLICLGENLSFFVLQHAIAYVQGD-KYYGAKATINVWAPKIEQPNEFSLSQLW 71
R PA H L L +Q+ +AY G+ KYYG K TINVW PKI +FS++QLW
Sbjct: 73 RQPAFDHPL------LKNHTIQYGVAYATGNAKYYGTKVTINVWKPKIATSRDFSMAQLW 126
Query: 72 ILGGSF-GEDLNSIEAGWQV 90
I GS+ +DLN+IEAGWQV
Sbjct: 127 ITAGSYANKDLNTIEAGWQV 146
>Os01g0550800 Protein of unknown function DUF239, plant domain containing protein
Length = 406
Score = 75.1 bits (183), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 34 QHAIAYVQGD-KYYGAKATINVWAPKIEQPNEFSLSQLWILGGSF-GEDLNSIEAGWQV 90
+ +AY GD YYG K TINVW P I +FSLSQLWI GS+ +DLN+IEAGWQV
Sbjct: 156 HYGVAYATGDSNYYGTKVTINVWQPTIATFGDFSLSQLWITAGSYENKDLNTIEAGWQV 214
>Os06g0277900 Protein of unknown function DUF239, plant domain containing protein
Length = 366
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 35 HAIAYVQGD-KYYGAKATINVWAPKIEQPNEFSLSQLWILGGSF-GEDLNSIEAGWQV 90
+ +AY GD YYG K TINVW P I +FSLSQLWI GS+ +DLN+IE GWQV
Sbjct: 117 YGVAYATGDANYYGTKVTINVWQPTIATSGDFSLSQLWISAGSYDNKDLNTIETGWQV 174
>Os01g0973100 Protein of unknown function DUF239, plant domain containing protein
Length = 256
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 34 QHAIAYVQGD-KYYGAKATINVWAPKIEQPNEFSLSQLWILGGSF-GEDLNSIEAGWQV 90
Q+ +A GD YYG KATIN+W P I +FSL+QLWI GS+ +DLN+IEAGWQV
Sbjct: 166 QYGVASATGDANYYGTKATINLWQPTIATSGDFSLAQLWISAGSYQNKDLNTIEAGWQV 224
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.136 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,362,054
Number of extensions: 116863
Number of successful extensions: 292
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 12
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)