BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0617500 Os03g0617500|AK119606
(306 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0617500 Cyclin-like domain containing protein 366 e-101
Os12g0588800 Cyclin-like domain containing protein 213 1e-55
Os03g0203800 Cyclin-like domain containing protein 117 9e-27
Os03g0392000 93 2e-19
Os09g0466100 Cyclin-like domain containing protein 91 7e-19
Os06g0236600 Similar to Cyclin delta-1 91 1e-18
Os08g0479300 Cyclin-like domain containing protein 90 2e-18
Os07g0620800 Cyclin-like domain containing protein 81 1e-15
Os09g0111100 Cyclin-like domain containing protein 75 6e-14
Os07g0556000 Cyclin-like domain containing protein 73 3e-13
Os09g0382300 Similar to Cyclin D3.1 protein 67 2e-11
>Os03g0617500 Cyclin-like domain containing protein
Length = 306
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/306 (65%), Positives = 200/306 (65%)
Query: 1 WRQRTSTRPGAPSPSCARRIXXXXXXXXXXXXXXXXXXXXMDWFALARRATVKWILETRG 60
WRQRTSTRPGAPSPSCARRI MDWFALARRATVKWILETRG
Sbjct: 1 WRQRTSTRPGAPSPSCARRIAPTSTTTAAAVAASPAAAAPMDWFALARRATVKWILETRG 60
Query: 61 CFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFR 120
CFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFR
Sbjct: 61 CFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFR 120
Query: 121 AGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRLRRHVXXXXXXXXXX 180
AGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRLRRHV
Sbjct: 121 AGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRLRRHVGGGGGAGASA 180
Query: 181 XXXXXXXXXXXVLDHRPSXXXXXXXXXXXXXXXXREALESKMSGLSPSFLLDKEDVFACY 240
VLDHRPS REALESKMSGLSPSFLLDKEDVFACY
Sbjct: 181 ALIFSAAEAASVLDHRPSTVAAAAVLAATHGALTREALESKMSGLSPSFLLDKEDVFACY 240
Query: 241 SAMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRMRLEL 300
SAML KRMRLEL
Sbjct: 241 SAMLSQPTSPASKSTTTTTGKRSSSSSCSESTDAASSYDATAASFPAAASCGSKRMRLEL 300
Query: 301 PGGILR 306
PGGILR
Sbjct: 301 PGGILR 306
>Os12g0588800 Cyclin-like domain containing protein
Length = 365
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/215 (56%), Positives = 134/215 (62%), Gaps = 16/215 (7%)
Query: 43 WFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACV 102
WF AR A VKWILETRG FGF HRTAYLAIAYFDRFCLRR +DR MPWAARLL++ACV
Sbjct: 95 WFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACV 154
Query: 103 SLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCL 162
S+AAKMEEY++PALSEF AG G F IRRMELLVLSTL WRM AVTPFD+LPC
Sbjct: 155 SVAAKMEEYQSPALSEFDAG---GGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCF 211
Query: 163 SSRL------------RRHVXXXXXXXXXXXXXXXXXXXXXVLDHRPSXXXXXXXXXXXX 210
SSRL VLD+RPS
Sbjct: 212 SSRLHRHHHGGAGAAGHGAAAAARVALNAVGFIFATAEAGSVLDYRPSTVAAAAILAASY 271
Query: 211 XX-XXREALESKMSGLSPSFLLDKEDVFACYSAML 244
+EALESKMS LSPS L+DKE+V ACYS M+
Sbjct: 272 GAPLTKEALESKMSNLSPSCLIDKENVHACYSMMV 306
>Os03g0203800 Cyclin-like domain containing protein
Length = 345
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 79/126 (62%), Gaps = 7/126 (5%)
Query: 43 WFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACV 102
W AR V WI++T F F +TAY+A+ Y DRF RRC+DR WA +LL+VAC+
Sbjct: 95 WMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRD-KEWALQLLSVACL 153
Query: 103 SLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCL 162
SLAAK+EE R P L EF+ + + C + RMELLVL+TL W+M TPF YL C
Sbjct: 154 SLAAKVEERRPPRLPEFKLDM------YDCASLMRMELLVLTTLKWQMITETPFSYLNCF 207
Query: 163 SSRLRR 168
+++ R
Sbjct: 208 TAKFRH 213
>Os03g0392000
Length = 386
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Query: 48 RRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSV---MPWAARLLAVACVSL 104
R A + WI + + + F AYLA+ Y DRF ++ SV MPW +LL VAC+SL
Sbjct: 104 RIAAIDWICKVQAYYSFGPLCAYLAVNYLDRFL--SSVEFSVTNDMPWMQQLLIVACLSL 161
Query: 105 AAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
AAKMEE AP + + V + Y F I RME++VL+TL WRM AVTPF Y+
Sbjct: 162 AAKMEETAAPGTLDLQ--VCNPEYVFDAETIHRMEIIVLTTLKWRMQAVTPFTYI 214
>Os09g0466100 Cyclin-like domain containing protein
Length = 356
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
Query: 48 RRATVKWILETRGCFGFCHRTAYLAIAYFDRF-CLRRCIDRSVMPWAARLLAVACVSLAA 106
R + WI + + F TA LA+ Y DRF L + D W +LLAVAC+SLAA
Sbjct: 103 RMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGK--DWMTQLLAVACLSLAA 160
Query: 107 KMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
KMEE P + + VG++ Y F I+RMELLVLSTL WRM AVTPF Y+
Sbjct: 161 KMEETDVPQSLDLQ--VGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYV 211
>Os06g0236600 Similar to Cyclin delta-1
Length = 347
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 7/114 (6%)
Query: 51 TVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEE 110
+V WIL+ R GF TAYLA++Y DRF R + WA++LL VAC+SLAAKMEE
Sbjct: 128 SVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPDH--GWASQLLCVACLSLAAKMEE 185
Query: 111 YRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPF---DYLPC 161
AP L + + + + F I+RMEL+VL LDWR+ +VTPF D+ C
Sbjct: 186 SSAPPLLDLQ--IEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFAC 237
>Os08g0479300 Cyclin-like domain containing protein
Length = 383
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 48 RRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAK 107
R + WI E + F TAYLA+ Y DRF + + W +LL+VAC+S+AAK
Sbjct: 110 RSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEG-RDWMTQLLSVACLSIAAK 168
Query: 108 MEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
MEE P + + +G+ + F I RMELLVL+ L+WRM AVTPF Y+
Sbjct: 169 MEETVVPQCLDLQ--IGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYI 218
>Os07g0620800 Cyclin-like domain containing protein
Length = 356
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 7/114 (6%)
Query: 48 RRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCI--DRSVMPWAARLLAVACVSLA 105
R+ + WI + + F + YLA+ Y DRF + D S W +LL+V+C+SLA
Sbjct: 95 RKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDES---WMQQLLSVSCLSLA 151
Query: 106 AKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
KMEE P + + V D Y F I+RMEL+V+ TL WR+ AVTPF ++
Sbjct: 152 TKMEETVVPLPMDLQ--VFDAEYVFEARHIKRMELIVMKTLKWRLQAVTPFSFI 203
>Os09g0111100 Cyclin-like domain containing protein
Length = 364
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Query: 47 ARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAA 106
AR A V W L GF TA LA+AY DR L + PW ARL AVACV+LAA
Sbjct: 77 AREAAVGWALRAVARLGFSALTAALAVAYLDRCFLGGALRLGDRPWMARLAAVACVALAA 136
Query: 107 KMEEYRAPALSEFRAGVG-----DDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
K+EE R P L + + ++ Y F +RRMELLVLS L WRM VTP YL
Sbjct: 137 KVEETRVPVLLDLQLCAAERADPNEAYVFEDKTVRRMELLVLSALGWRMHPVTPLSYL 194
>Os07g0556000 Cyclin-like domain containing protein
Length = 320
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 67 RTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDD 126
R AYLA+ Y DR+ +R + PWA RLLA++C++LAAKM+ RA A+S G++
Sbjct: 77 RVAYLALNYVDRYLSKRQLACERNPWAPRLLAISCLTLAAKMQ--RAAAISAADIQRGEE 134
Query: 127 GYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYL 159
+ F I+RME +VL+ L+WR +VTP +L
Sbjct: 135 -FMFDEAKIQRMEQMVLNALEWRTRSVTPLAFL 166
>Os09g0382300 Similar to Cyclin D3.1 protein
Length = 271
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 47 ARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAA 106
AR +V WIL+ + GF TAYLA+ Y DRF R + WA +LLAVAC+SLAA
Sbjct: 81 ARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEG-QGWAMQLLAVACLSLAA 139
Query: 107 KMEEYRAPALSEFRA 121
KMEE P+L + +A
Sbjct: 140 KMEETLVPSLLDLQA 154
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.330 0.139 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,034,231
Number of extensions: 208100
Number of successful extensions: 542
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 11
Length of query: 306
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 205
Effective length of database: 11,762,187
Effective search space: 2411248335
Effective search space used: 2411248335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 156 (64.7 bits)