BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0721200 Os02g0721200|Os02g0721200
(249 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0721200 Ubiquitin-conjugating enzyme, E2 domain contai... 416 e-116
Os02g0721500 186 9e-48
Os02g0721100 Similar to E2 ubiquitin-conjugating enzyme Ubc... 172 3e-43
Os01g0819400 Similar to Ubiquitin-conjugating enzyme (EC 6.... 100 1e-21
Os01g0658400 Ubiquitin-conjugating enzyme OsUBC5a 96 2e-20
Os04g0667800 Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ub... 95 4e-20
Os09g0293400 Similar to Ubiquitin-conjugating enzyme (EC 6.... 94 7e-20
Os02g0261100 Ubiquitin-conjugating enzyme OsUBC5b 94 1e-19
Os02g0120600 Similar to Ubiquitin-conjugating enzyme E2-17 ... 89 2e-18
Os07g0577400 Similar to Constitutive photomorphogenesis pro... 65 6e-11
>Os02g0721200 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 249
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/232 (88%), Positives = 206/232 (88%)
Query: 1 MTVIIDEXXXXXXXXXXKQSTTARRWWMKADPRKAAQRRISRELEDLWLDPPAYCRPGPE 60
MTVIIDE KQSTTARRWWMKADPRKAAQRRISRELEDLWLDPPAYCRPGPE
Sbjct: 1 MTVIIDEPPPAPAPPQPKQSTTARRWWMKADPRKAAQRRISRELEDLWLDPPAYCRPGPE 60
Query: 61 PVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEYPFQPPKLTFKTKVKSLAQSLSRSLA 120
PVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEYPFQPPKLTFKTKVKSLAQSLSRSLA
Sbjct: 61 PVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEYPFQPPKLTFKTKVKSLAQSLSRSLA 120
Query: 121 CVHRQISQLMLQSRTYECNSIAAGVPSEHXXXXXXXXXXXXXXXXFVSILYDPLLDYPIN 180
CVHRQISQLMLQSRTYECNSIAAGVPSEH FVSILYDPLLDYPIN
Sbjct: 121 CVHRQISQLMLQSRTYECNSIAAGVPSEHRRRGADGGGRASRLLGFVSILYDPLLDYPIN 180
Query: 181 DDIAEQYENEYELYEKEAREWTRRYSSTPIASHWLPKAMRTPPAVPHIPATA 232
DDIAEQYENEYELYEKEAREWTRRYSSTPIASHWLPKAMRTPPAVPHIPATA
Sbjct: 181 DDIAEQYENEYELYEKEAREWTRRYSSTPIASHWLPKAMRTPPAVPHIPATA 232
>Os02g0721500
Length = 290
Score = 186 bits (473), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 129/218 (59%), Gaps = 38/218 (17%)
Query: 20 STTARRWWMKADPRKAAQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTP 79
ST A R + + RK A R I EL LW DPP Y RPGPEPVTD HWEV+IDGP GTP
Sbjct: 16 STAAAR--RQDEERKTALRIIRNELRLLWRDPPPYLRPGPEPVTDPFHWEVVIDGPAGTP 73
Query: 80 YAGGTFPVDVWYPNE-YPFQPPKLTFKTKVKSLAQSLSRSLACVHRQISQ---LMLQSRT 135
YAGGTFPVD+ P YPF PK+TFKT V H I + ++L + +
Sbjct: 74 YAGGTFPVDIQLPAAGYPFVHPKVTFKTLV-------------YHPNIDEEGNMVLDAES 120
Query: 136 YECNSIAAGVPSEHXXXXXXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYE 195
+ C + G+ FVS+LYDPLLDYPIN DIAEQY +YE YE
Sbjct: 121 WSCATKLRGL-----------------LIGFVSVLYDPLLDYPINYDIAEQYAYDYERYE 163
Query: 196 KEAREWTRRYSSTPIASHWLPKAM--RTPPAVPHIPAT 231
EAR WTR +SS P+ SH+ P A+ RTPPAVPH PAT
Sbjct: 164 AEARAWTREFSSAPVVSHYPPNAVVGRTPPAVPHFPAT 201
>Os02g0721100 Similar to E2 ubiquitin-conjugating enzyme UbcH5B (Fragment)
Length = 234
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 93/191 (48%), Positives = 115/191 (60%), Gaps = 31/191 (16%)
Query: 43 ELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEYPFQPPKL 102
EL WLDPP YCRPGP PV D HWEV+IDGP TPYAGG FPVDVW+P +YPF+PPKL
Sbjct: 30 ELWQFWLDPPPYCRPGPSPVKDHFHWEVVIDGPAATPYAGGVFPVDVWFPYDYPFRPPKL 89
Query: 103 TFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXXXXXXXXX 160
FKTKV ++ +L S + ++ C
Sbjct: 90 FFKTKVYHPNIDGKGRMALDIFQDNWSPALTINKLLLC---------------------- 127
Query: 161 XXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYSSTPIASHWLPKAM- 219
FVS+L+DPLLD P N IA+QY++EYE YE++AR WT+++SSTPI SH+ P A+
Sbjct: 128 -----FVSVLFDPLLDRPTNRCIAKQYKHEYEAYEEKARAWTQKHSSTPIVSHYPPYAVI 182
Query: 220 -RTPPAVPHIP 229
TPPAVPH P
Sbjct: 183 GSTPPAVPHFP 193
>Os01g0819400 Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin
carrier protein)
Length = 148
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 30/173 (17%)
Query: 36 AQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEY 95
A +RI +EL+DL DPP C GP D+ HW+ I GPP +PYAGG F V++ +P +Y
Sbjct: 2 ASKRILKELKDLQKDPPTSCSAGPA-GEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDY 60
Query: 96 PFQPPKLTFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXX 153
PF+PPK++FKTKV ++ + S L + Q S + S+
Sbjct: 61 PFKPPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVL----------------- 103
Query: 154 XXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYS 206
S+L DP D P+ +IA Y+ + YE AR WT++Y+
Sbjct: 104 ----------LSICSLLTDPNPDDPLVPEIAHMYKTDRPKYETTARSWTQKYA 146
>Os01g0658400 Ubiquitin-conjugating enzyme OsUBC5a
Length = 147
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 84/173 (48%), Gaps = 30/173 (17%)
Query: 36 AQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEY 95
A +RI +EL+DL DPP C GP D+ HW+ I GP +PYAGG F V + +P +Y
Sbjct: 2 ASKRIQKELKDLQKDPPTSCSAGPV-GEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDY 60
Query: 96 PFQPPKLTFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXX 153
PF+PPK+ F+TKV ++ + S L + Q S + S+
Sbjct: 61 PFKPPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVL----------------- 103
Query: 154 XXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYS 206
S+L DP D P+ +IA Y+ + YE AR WT+RY+
Sbjct: 104 ----------LSICSLLTDPNPDDPLVPEIAHMYKTDRHKYENTARTWTQRYA 146
>Os04g0667800 Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier
protein)
Length = 148
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 86/173 (49%), Gaps = 30/173 (17%)
Query: 36 AQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEY 95
A +RI +EL+DL DPP C GP D+ HW+ I GP +P+AGG F V++ +P +Y
Sbjct: 2 ASKRILKELKDLQKDPPTSCSAGPVG-EDMFHWQATIMGPSDSPFAGGVFLVNIHFPPDY 60
Query: 96 PFQPPKLTFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXX 153
PF+PPK++F+TKV ++ + S L + Q S + S+
Sbjct: 61 PFKPPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVL----------------- 103
Query: 154 XXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYS 206
S+L DP D P+ +IA Y+ + YE AR WT++Y+
Sbjct: 104 ----------LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYA 146
>Os09g0293400 Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin
carrier protein)
Length = 148
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 87/173 (50%), Gaps = 30/173 (17%)
Query: 36 AQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEY 95
A +RI +EL DL DPP C GP DL HW+ I GP +PYAGG F V++ +P +Y
Sbjct: 2 ASKRIQKELMDLRKDPPTSCSAGPA-GEDLFHWQATIMGPSDSPYAGGVFFVNIHFPPDY 60
Query: 96 PFQPPKLTFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXX 153
PF+PPK+ F+TKV ++ + S L + Q S + S+ S
Sbjct: 61 PFKPPKVNFQTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSIS------------- 107
Query: 154 XXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYS 206
S+L DP D P+ +IA Y+++ YE+ AR WT++Y+
Sbjct: 108 --------------SLLTDPNPDDPLVPEIAHVYKSQRPRYEETARAWTQKYA 146
>Os02g0261100 Ubiquitin-conjugating enzyme OsUBC5b
Length = 148
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 30/173 (17%)
Query: 36 AQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEY 95
A +RI +EL+DL DPP C GP D+ HW+ + GP +PYAGG F V + +P +Y
Sbjct: 2 ASKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATLMGPSDSPYAGGVFLVTIHFPPDY 60
Query: 96 PFQPPKLTFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXX 153
PF+PPK+ KTKV ++ + S L + Q S + S+
Sbjct: 61 PFKPPKVALKTKVFHPNINSNGSICLDILKEQWSPALTISKVL----------------- 103
Query: 154 XXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYS 206
S+L DP D P+ +IA Y+ + YE AR WT++Y+
Sbjct: 104 ----------LSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYA 146
>Os02g0120600 Similar to Ubiquitin-conjugating enzyme E2-17 kDa 9 (EC 6.3.2.19)
(Ubiquitin- protein ligase 9) (Ubiquitin carrier protein
9) (UBCAT4B)
Length = 148
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 30/173 (17%)
Query: 36 AQRRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEY 95
A RRI +EL+DL DPP C GP D+ HW+ I GP +PY+GG F V + +P +Y
Sbjct: 2 ALRRIIKELKDLQRDPPTSCSAGPV-SDDMFHWQATIMGPNDSPYSGGVFLVTIHFPPDY 60
Query: 96 PFQPPKLTFKTKV--KSLAQSLSRSLACVHRQISQLMLQSRTYECNSIAAGVPSEHXXXX 153
PF+PPK+ FKTKV ++ + + L + Q S + S+
Sbjct: 61 PFKPPKVAFKTKVFHPNINSNGNICLDILKDQWSPALTISKVL----------------- 103
Query: 154 XXXXXXXXXXXXFVSILYDPLLDYPINDDIAEQYENEYELYEKEAREWTRRYS 206
S+L DP D P+ +IA + + YE AR WT++Y+
Sbjct: 104 ----------LSICSLLTDPNPDDPLVPEIAHMCKTDRLRYESTARGWTQKYA 146
>Os07g0577400 Similar to Constitutive photomorphogenesis protein 10
Length = 202
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 38 RRISRELEDLWLDPPAYCRPGPEPVTDLLHWEVIIDGPPGTPYAGGTFPVDVWYPNEYPF 97
+RI +EL DL + C GP+ +L HW I GP G+PY GG F +D+ +P +YPF
Sbjct: 62 KRIQKELMDL---NASDCSAGPKG-DNLYHWLSTIIGPQGSPYEGGIFFLDIVFPIDYPF 117
Query: 98 QPPKLTFKTKV 108
+PP +TFKT++
Sbjct: 118 KPPMVTFKTRI 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,656,137
Number of extensions: 380390
Number of successful extensions: 923
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 915
Number of HSP's successfully gapped: 11
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)