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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0721200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin-conjugating enzyme, E2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0256) R2 : 0.00475
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0797 (0.054) R2dN8 : 0.00614 R2N8 : 0.00475
σ : 0.483
deviance : 107.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.39 0.468 3.11 -0.122 0.128 -0.334 0.435 2.94 -0.0547 15.9 60.06 272 -- --
105.45 0.482 3.09 -0.0501 0.106 -0.116 -0.146 -- -0.0681 15.5 60.06 272 -- --
99.87 0.465 3.11 -0.111 0.131 -0.343 -- 2.78 -0.0452 15.6 60.01 271 -- --
105.52 0.482 3.09 -0.0526 0.107 -0.113 -- -- -0.0693 15.8 60.06 272 -- --
100.54 0.467 3.1 -0.126 -- -0.41 -- 2.69 -0.0473 -- 60.17 271 -- --
105.9 0.482 3.09 -0.0467 0.138 -- -0.118 -- -0.0814 15.3 -- -- -- --
105.94 0.482 3.09 -0.0489 0.138 -- -- -- -0.0821 15.5 -- -- -- --
106.08 0.482 3.09 -0.058 -- -0.157 -- -- -0.0669 -- 60 126 -- --
105.27 0.478 3.1 -- 0.18 0.326 -- -- -0.0891 16.3 49 508 -- --
107.01 0.483 3.09 -0.0547 -- -- -- -- -0.0857 -- -- -- -- --
106 0.482 3.09 -- 0.139 -- -- -- -0.0766 15.5 -- -- -- --
105.67 0.479 3.1 -- -- 0.324 -- -- -0.111 -- 49.47 1592 -- --
107.09 0.483 3.09 -- -- -- -- -- -0.0797 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.41 radiation 30 270 > th dose dependent rect. 15 17
2 95.90 wind 1 270 < th dose dependent rect. 15 1
3 96.22 radiation 40 270 > th dose independent rect. 15 1
20 96.22 radiation 40 270 > th dose dependent rect. 15 1
37 96.42 wind 1 270 < th dose independent rect. 15 1
75 97.52 wind 5 1440 < th dose dependent rect. 13 2
80 97.64 wind 3 1440 > th dose independent rect. 13 3
83 97.78 humidity 60 270 < th dose independent sin 17 NA
85 97.84 wind 3 1440 < th dose independent rect. 13 3
88 97.96 humidity 60 270 < th dose independent rect. 11 5
93 98.06 humidity 60 270 < th dose independent rect. 11 9
111 98.10 atmosphere 1005 270 < th dose dependent rect. 14 1
140 98.37 humidity 60 270 > th dose independent sin 21 NA
153 98.62 wind 1 1440 > th dose dependent rect. 14 1
198 98.81 humidity 60 270 > th dose independent rect. 5 23
219 99.02 atmosphere 1005 270 < th dose dependent rect. 11 5
223 99.05 humidity 80 43200 > th dose dependent rect. 6 3
226 99.09 humidity 60 270 < th dose independent rect. 15 1
279 99.37 radiation 40 270 > th dose dependent rect. 14 19
281 99.39 humidity 60 270 > th dose independent no NA NA
283 99.40 humidity 60 270 < th dose independent rect. 14 6
300 99.44 humidity 60 30 < th dose dependent rect. 11 5
302 99.45 humidity 60 270 < th dose independent rect. 13 23
313 99.49 humidity 60 270 > th dose independent rect. 2 23
346 99.64 humidity 90 43200 < th dose independent rect. 6 1
348 99.66 humidity 60 10 < th dose independent rect. 15 1
351 99.67 radiation 40 270 < th dose independent sin 13 NA
357 99.68 humidity 60 270 < th dose independent rect. 19 21
362 99.69 humidity 60 270 > th dose independent rect. 12 23
448 99.82 humidity 90 1440 > th dose dependent rect. 6 2
457 99.84 humidity 90 43200 > th dose independent rect. 6 1
462 99.86 radiation 20 4320 > th dose independent rect. 7 1
464 99.87 humidity 60 270 < th dose independent no NA NA
545 99.88 humidity 80 43200 > th dose independent rect. 9 2
560 99.89 atmosphere 1005 720 < th dose dependent rect. 10 1
593 99.95 atmosphere 995 43200 > th dose independent rect. 15 1
599 99.97 atmosphere 995 43200 < th dose independent rect. 15 1
600 99.97 humidity 80 43200 < th dose independent rect. 9 2
631 100.04 humidity 60 270 > th dose independent rect. 6 15
649 100.10 radiation 20 270 > th dose dependent sin 13 NA
658 100.14 atmosphere 995 43200 > th dose independent rect. 13 5
667 100.17 atmosphere 995 43200 < th dose independent rect. 13 9
668 100.17 atmosphere 995 43200 > th dose independent rect. 12 10
688 100.18 radiation 30 30 > th dose dependent rect. 15 1
778 100.20 radiation 20 4320 > th dose dependent rect. 7 1
779 100.20 wind 9 43200 > th dose dependent rect. 13 21
798 100.22 atmosphere 995 43200 > th dose independent sin 21 NA
800 100.22 wind 3 270 < th dose independent rect. 11 6
808 100.23 atmosphere 995 43200 < th dose independent rect. 13 6
813 100.23 humidity 60 270 > th dose independent rect. 5 12
815 100.23 atmosphere 995 43200 < th dose dependent rect. 15 1
846 100.28 wind 9 43200 > th dose dependent rect. 18 22
848 100.29 humidity 60 10 < th dose independent sin 16 NA
854 100.29 atmosphere 995 43200 > th dose independent rect. 5 14
909 100.31 humidity 60 270 > th dose independent rect. 17 23
914 100.31 wind 9 43200 > th dose dependent rect. 18 20
927 100.33 atmosphere 995 43200 < th dose independent sin 21 NA
928 100.33 atmosphere 1005 270 < th dose independent rect. 14 1
950 100.33 humidity 90 14400 > th dose dependent rect. 21 4
954 100.33 wind 9 43200 > th dose dependent rect. 15 23
962 100.34 humidity 90 14400 > th dose dependent rect. 22 1
964 100.34 wind 9 43200 > th dose dependent rect. 7 13