BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0707900 Os02g0707900|AK064357
(177 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0707900 Universal stress protein (Usp) family protein 367 e-102
Os01g0511100 Universal stress protein (Usp) family protein 80 8e-16
Os01g0303800 Universal stress protein (Usp) family protein 77 7e-15
AK103732 77 7e-15
Os02g0760500 Similar to ER6 protein (Fragment) 76 2e-14
Os05g0355400 Universal stress protein (Usp) family protein 75 4e-14
Os03g0750000 Universal stress protein (Usp) family protein 73 9e-14
Os05g0157200 Universal stress protein (Usp) family protein 71 3e-13
Os10g0437500 Universal stress protein (Usp) family protein 68 3e-12
Os03g0305400 Universal stress protein (Usp) family protein 67 7e-12
Os05g0453700 Similar to ENOD18 protein (Fragment) 66 2e-11
>Os02g0707900 Universal stress protein (Usp) family protein
Length = 177
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/177 (100%), Positives = 177/177 (100%)
Query: 1 MAGSSEPTRVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQVPDE 60
MAGSSEPTRVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQVPDE
Sbjct: 1 MAGSSEPTRVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQVPDE 60
Query: 61 DGFDDMDSIYASPPDFQRMKQRDKIRGLHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICS 120
DGFDDMDSIYASPPDFQRMKQRDKIRGLHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICS
Sbjct: 61 DGFDDMDSIYASPPDFQRMKQRDKIRGLHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICS 120
Query: 121 EVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKRKADEAPQDPVDD 177
EVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKRKADEAPQDPVDD
Sbjct: 121 EVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKRKADEAPQDPVDD 177
>Os01g0511100 Universal stress protein (Usp) family protein
Length = 167
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 22/177 (12%)
Query: 1 MAGSSEP----TRVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQ 56
MA S P + MVAV+ES + A +W L L + A LL L VQ
Sbjct: 1 MASPSAPGPKLQKAMVAVDESEFSHH---------ALEWALRNLAPTIAPP--LLVLTVQ 49
Query: 57 VPDEDGF-------DDMDSIYASPPDFQRMKQRDKIRGLHLLEHFVNQCHQLEIKCEAWI 109
G+ + + +P + M+++ + LL+ C Q + E I
Sbjct: 50 PLLPLGYVSAASFGSPLGTPVVAPELIKAMQEQQQQLSQALLDKAKQICAQHGVAVETMI 109
Query: 110 KQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKRK 166
K GDPKE+IC + + DLL+VGS GP QR+F+G+VS +C+ H+ CPV+ +K++
Sbjct: 110 KVGDPKEMICQAAEESKVDLLIVGSHSRGPVQRLFLGSVSNYCMHHSKCPVLVVKKQ 166
>Os01g0303800 Universal stress protein (Usp) family protein
Length = 182
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 9 RVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQVP-------DED 61
R++VAV+ES + A W L+ +V S++ G L+ LH + P D
Sbjct: 32 RIVVAVDESEESTH---------ALTWCLANVV-SSSGGDTLVLLHARRPRPVYAAMDSS 81
Query: 62 GFDDMDSIYASPPDFQRMKQRDKI-RGLHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICS 120
G+ + AS + + + H+ F + + E ++ GDP++VIC
Sbjct: 82 GYMMTSDVMASMDKYAAAVSAAAVGKAKHICAAFPH------VTVETMVESGDPRDVICD 135
Query: 121 EVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKR 165
+++ DLLV+G+ G G QR F+G+VS C ++ CPV+ +KR
Sbjct: 136 ATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKR 180
>AK103732
Length = 182
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 24/165 (14%)
Query: 9 RVMVAVNESSIKGYPHPSISCRAAFDWMLSKLVRSNAAGFHLLFLHVQVP-------DED 61
R++VAV+ES + A W L+ +V S++ G L+ LH + P D
Sbjct: 32 RIVVAVDESEESTH---------ALTWCLANVV-SSSGGDTLVLLHARRPRPVYAAMDSS 81
Query: 62 GFDDMDSIYASPPDFQRMKQRDKI-RGLHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICS 120
G+ + AS + + + H+ F + + E ++ GDP++VIC
Sbjct: 82 GYMMTSDVMASMDKYAAAVSAAAVGKAKHICAAFPH------VTVETMVESGDPRDVICD 135
Query: 121 EVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKR 165
+++ DLLV+G+ G G QR F+G+VS C ++ CPV+ +KR
Sbjct: 136 ATEKMAADLLVMGTHGYGLIQRAFLGSVSNHCAQNCKCPVLIVKR 180
>Os02g0760500 Similar to ER6 protein (Fragment)
Length = 162
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 32 AFDWMLSKL-VRSNAAGFHLLFLHVQVPDE--DGFDDMDSIYASP-----PDFQRMKQRD 83
A W L L +R + A L+ LHVQ P G + + P P F + +
Sbjct: 22 ALRWALDNLRLRPDGA---LVVLHVQPPPSIAAGLNPGPIPFGGPSEVEVPAFTQAIEAH 78
Query: 84 KIRGLH-LLEHFVNQCHQLEIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQR 142
+ R +L+H + C + ++ + + GDPKE IC ++ DLLV+G R GP +R
Sbjct: 79 QRRITQAILDHALKICSEKNVEVKTDVVVGDPKEKICEVTANLKADLLVMGCRAFGPLKR 138
Query: 143 VFVGTVSEFCVKHADCPVITIK 164
+F+G+VS +C+ + CPV+ IK
Sbjct: 139 MFLGSVSNYCINNVVCPVVVIK 160
>Os05g0355400 Universal stress protein (Usp) family protein
Length = 96
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 88 LHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGT 147
+ L +H V+ +++K E +++GDP++VIC V++ D++V+GS G G QR +G+
Sbjct: 13 VRLTDHLVSS--DVQVKVETRVEKGDPRDVICGAVEKAGADMVVMGSHGYGFLQRTLLGS 70
Query: 148 VSEFCVKHADCPVITIKRKADEA 170
VS CV+H CPV+ +KR A
Sbjct: 71 VSNHCVQHCKCPVVVVKRPGTNA 93
>Os03g0750000 Universal stress protein (Usp) family protein
Length = 128
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 95 VNQCHQLEIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVK 154
++ C Q E+ I +GD KE IC V+ + D+LV+GSRGLG +R F+G+VS++ V
Sbjct: 52 LDVCKQREVSATGAIVEGDAKEAICQAVEEMHADMLVLGSRGLGKIKRAFLGSVSDYLVH 111
Query: 155 HADCPVITIK 164
HA CPV+ +K
Sbjct: 112 HACCPVLVVK 121
>Os05g0157200 Universal stress protein (Usp) family protein
Length = 167
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 70/148 (47%), Gaps = 12/148 (8%)
Query: 26 SISCRAAFDWMLSKLVRSNAAGFHLLFLHV-QVPD-EDGFDDMDSIYASP----PDFQR- 78
S RAA W L+R AG HL+ LHV + PD E G + SP DF
Sbjct: 19 SEGSRAALRWAADNLLR---AGDHLILLHVLKDPDYEQGETLLWEATGSPLIPLSDFSEP 75
Query: 79 --MKQRDKIRGLHLLEHFVNQCHQLEIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRG 136
K+ L+ Q E+ + GDP+E +C + + LV+GSRG
Sbjct: 76 TIAKKYGAKPDAETLDMLNTVARQKEVVVVFKVLWGDPREKLCQAINEIPMSCLVIGSRG 135
Query: 137 LGPFQRVFVGTVSEFCVKHADCPVITIK 164
LG +RV +G+VS++ V +A CPV +K
Sbjct: 136 LGKLKRVLLGSVSDYVVNNATCPVTVVK 163
>Os10g0437500 Universal stress protein (Usp) family protein
Length = 181
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)
Query: 54 HVQVPDEDGFDDMDSIY--ASPPDFQRMKQRDKIRGLHLLEHFVNQCHQLEIKCEAWIKQ 111
HV P G ++Y AS + R Q + R L + + C + + +
Sbjct: 58 HVMFPVGPG----SAVYGAASMMEAVRAAQAENARNLLVRARLI--CERRGVAAATVAVE 111
Query: 112 GDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVITIKRKADEAP 171
G+P+E +C + LLVVGSRGLG +R F+G+VS++C A CP++ +K D
Sbjct: 112 GEPREALCRAAEDAGAGLLVVGSRGLGALKRAFLGSVSDYCAHRASCPIMVVKPPPDAGD 171
Query: 172 QD 173
+D
Sbjct: 172 ED 173
>Os03g0305400 Universal stress protein (Usp) family protein
Length = 180
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 44/63 (69%)
Query: 102 EIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHADCPVI 161
E+K E + GD + VIC ++ D+LV+GS G G F+R +G+VS++CV++A+CPV+
Sbjct: 117 EMKVEVKVAVGDARNVICQMADKLGADVLVMGSHGYGLFKRALLGSVSDYCVRNANCPVL 176
Query: 162 TIK 164
+K
Sbjct: 177 IVK 179
>Os05g0453700 Similar to ENOD18 protein (Fragment)
Length = 165
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 89 HLLEHFVNQCHQLEIKCEAWIKQGDPKEVICSEVKRVQPDLLVVGSRGLGPFQRVFVGTV 148
+L+ QLE+ A + GD +E +C V+ + D LV+GSRGLG QR+ +G+V
Sbjct: 88 EVLDMLDTAARQLELTVVAKLYWGDAREKLCDAVEEQKIDTLVMGSRGLGSIQRILLGSV 147
Query: 149 SEFCVKHADCPVITIKRK 166
+ + + +A CPV +K K
Sbjct: 148 TNYVLSNASCPVTVVKGK 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,642,272
Number of extensions: 267325
Number of successful extensions: 543
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 11
Length of query: 177
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 83
Effective length of database: 12,127,685
Effective search space: 1006597855
Effective search space used: 1006597855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 152 (63.2 bits)