BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0634900 Os02g0634900|AK072855
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 481 e-136
Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 479 e-136
Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) ... 165 2e-41
Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC... 164 8e-41
Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) ... 161 5e-40
Os06g0177100 153 1e-37
Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) ... 153 1e-37
Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment) 151 3e-37
Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) ... 147 7e-36
Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) ... 129 1e-30
Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) ... 120 7e-28
Os07g0614100 Alpha 1-2 subunit of 20S proteasome 105 2e-23
Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC... 100 8e-22
>Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
Query: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE
Sbjct: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
Query: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE
Sbjct: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
Query: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE 235
DMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE
Sbjct: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE 235
>Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 479 bits (1233), Expect = e-136, Method: Compositional matrix adjust.
Identities = 233/235 (99%), Positives = 235/235 (100%)
Query: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
Query: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE
Sbjct: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
Query: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE
Sbjct: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
Query: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFLEEVE 235
DMELDDAIHTAILTLKEGYEGQISANNIEIG+IRSDREFKVL+PAEIKDFLEEVE
Sbjct: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEVE 235
>Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha
subunit D) (20S proteasome subunit alpha-4)
Length = 249
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 137/230 (59%), Gaps = 5/230 (2%)
Query: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
++Y ++T FSP G L Q+E+AL AV G ++G++ ++ VV+ EKK L D SV+
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVR 61
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
KI SL +I + +G+ D RVL+ ++R + Q + ++ + V + R A + Q++TQ
Sbjct: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQ 121
Query: 124 SGGVRPFGVSLLIAGYD--DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181
SGGVRPFG+S LI G+D + P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y E
Sbjct: 122 SGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE- 180
Query: 182 MELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFL 231
+ I AI L E E NIEI V+ + L AEI +++
Sbjct: 181 TSGKETIKLAIRALLEVVES--GGKNIEIAVMTQKDGLRQLEEAEIDEYV 228
>Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S
proteasome alpha subunit D) (20S proteasome subunit
alpha-4)
Length = 249
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 89/230 (38%), Positives = 136/230 (59%), Gaps = 5/230 (2%)
Query: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
++Y ++T FSP G L Q+E+AL AV G ++G++ + VV+ EKK L D S++
Sbjct: 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMR 61
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
KI SL +I + +G+ D RVL+ ++R + Q + ++ + V + R A + Q++TQ
Sbjct: 62 KIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121
Query: 124 SGGVRPFGVSLLIAGYD--DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTED 181
SGGVRPFG+S LI G+D P LYQ DPSG++ +WKA+A G+N ++ + FLEK Y +D
Sbjct: 122 SGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNY-KD 180
Query: 182 MELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIKDFL 231
+ I AI L E E NIEI V+ + L AEI +++
Sbjct: 181 TSGKETIKLAIRALLEVVES--GGKNIEIAVMTHKDGLRELEEAEIDEYV 228
>Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha
subunit E) (20S proteasome subunit alpha-5)
Length = 237
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 140/228 (61%), Gaps = 5/228 (2%)
Query: 4 SQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQ 63
++Y + TFSP G+L Q+E+A+ A+ G T++G+K +GVV+A EK++ S L++ +SV+
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVE 65
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPV---TQLVRETAAVMQE 120
KI + +IG SG+ D R LV +R + Q + Y E + V TQ + + A E
Sbjct: 66 KIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGE 125
Query: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE 180
+ RPFGVSLLIAG+D+NGP LY DPSG+++ A A+G A + L+++Y +
Sbjct: 126 GDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNK 185
Query: 181 DMELDDAIHTAILTLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIK 228
++ L +A A+ LK+ E +++ NN++I + + + + TPAE++
Sbjct: 186 ELTLQEAETIALSILKQVMEEKVTPNNVDIAKVSPN--YHLYTPAEVE 231
>Os06g0177100
Length = 250
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 140/235 (59%), Gaps = 8/235 (3%)
Query: 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET-SVQ 63
+Y T FSP G+L Q+E+A+ A+G+ ++LG+ AA+GVV+ EKK+ S L+ + S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
K+ + ++ +G+ D +L+ +R AQ+Y Y+E IPV QLV+ Q +TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 124 SGGVRPFGVSLLIAGYD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182
GG+RPFGVS L AG+D +G QLY DPSG+Y WKA+A+G N A++ L++ Y + M
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGM 183
Query: 183 ELDDAIHTAILTLKEGYEG-QISANNIEIGVI-----RSDREFKVLTPAEIKDFL 231
++A+ A+ L + + ++A +E+ + + +++V +P + L
Sbjct: 184 TREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLL 238
>Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha
subunit C) (20S proteasome subunit alpha-3)
Length = 250
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 140/235 (59%), Gaps = 8/235 (3%)
Query: 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET-SVQ 63
+Y T FSP G+L Q+E+A+ A+G+ ++LG+ AA+GVV+ EKK+ S L+ + S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
K+ + ++ +G+ D +L+ +R AQ+Y Y+E IPV QLV+ Q +TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 124 SGGVRPFGVSLLIAGYD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182
GG+RPFGVS L AG+D +G QLY DPSG+Y WKA+A+G N A++ L++ Y + M
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGM 183
Query: 183 ELDDAIHTAILTLKEGYEG-QISANNIEIGVI-----RSDREFKVLTPAEIKDFL 231
++A+ A+ L + + ++A +E+ + + +++V +P + L
Sbjct: 184 TREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLL 238
>Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment)
Length = 250
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 140/235 (59%), Gaps = 8/235 (3%)
Query: 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET-SVQ 63
+Y T FSP G+L Q+E+A+ A+G+ ++LG+ AA+GVV+ EKK+ S L+ + S +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
K+ + ++ +G+ D +L+ +R AQ+Y Y+E IPV QLV+ Q +TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 124 SGGVRPFGVSLLIAGYD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182
GG+RPFGVS L AG+D +G QLY DPSG+Y WKA+A+G N A++ L++ Y + +
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGL 183
Query: 183 ELDDAIHTAILTLKEGYEG-QISANNIEIGVI-----RSDREFKVLTPAEIKDFL 231
++A+ A+ L + + ++A +E+ + + +++V +P + L
Sbjct: 184 TREEAVALALKVLSKTMDSTSLTAEKLELAEVFLQPGTGEVQYQVCSPEAMGKLL 238
>Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha
subunit A) (20S proteasome subunit alpha-1)
Length = 246
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 131/231 (56%), Gaps = 5/231 (2%)
Query: 6 YSFSLTTFSPSGKLVQIEHALTAVGS-GQTSLGIKAANGVVIATEKKLPSILVDETSVQK 64
Y +T FSP G+L Q+E+A AV S G TS+G++ + V + T+KK+P L+D TSV
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH 68
Query: 65 IQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQS 124
+ +T IG++ +G+ D R LV ++R +A ++ + +PV L + A Q +TQ
Sbjct: 69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQH 128
Query: 125 GGVRPFGVSLLIAGYD-DNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDME 183
+RP GV ++ GYD + QL++ DP+G +F KA++ G A FLEK+ +D +
Sbjct: 129 AYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQ 188
Query: 184 L--DDAIHTAILTLKEGYEGQISANNIEIGVIR-SDREFKVLTPAEIKDFL 231
++ + AI L+ + A IE+GV+R DR F+ LT EI L
Sbjct: 189 FSYEETVQIAISALQSVLQEDFKATEIEVGVVRKDDRVFRALTTEEIDQHL 239
>Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha
subunit G) (20S proteasome subunit alpha-7)
Length = 249
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 109/183 (59%)
Query: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKI 65
Y S+TTFSP G++ Q+E+A AV + T +GIK +G+V+ EK + S ++ E S ++I
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRI 67
Query: 66 QSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSG 125
S+ + G+ +G+ D R +V +++ +A Y ++Y E I V +L A+ + T
Sbjct: 68 HSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYW 127
Query: 126 GVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELD 185
+RPFG +++ GYD +GPQLY ++PSG + + +A+GK AKT +EK ++
Sbjct: 128 WLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCR 187
Query: 186 DAI 188
+ I
Sbjct: 188 EGI 190
>Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha
subunit F) (20S proteasome subunit alpha-6) (Proteasome
component C2)
Length = 270
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 5/216 (2%)
Query: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
M +QY +TT+SP+G+L Q+E+A+ AV G +G+++ V+A K S L +
Sbjct: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SS 58
Query: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
+K+ + + GV +G+ D RVL R R + + +Y +PV++L A Q
Sbjct: 59 HQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQV 118
Query: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYT- 179
TQ RP+GV LL+AG D++G LY PSG+YF ++A A+G AKTFLE+R+
Sbjct: 119 CTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEG 178
Query: 180 -EDMELDDAIHTAILTLKEGYEGQ-ISANNIEIGVI 213
D + I A+ +KE +G+ ++++N + ++
Sbjct: 179 YNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
>Os07g0614100 Alpha 1-2 subunit of 20S proteasome
Length = 253
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 114/232 (49%), Gaps = 6/232 (2%)
Query: 2 GDSQYSFSLTTFSPSGKLVQIEHALTAVG-SGQTSLGIKAANGVVIATEKKLPSILVDET 60
G + Y +T FSP G+L Q+++A AV +G TS+G++ + V + T +K L D T
Sbjct: 19 GPADYERFITLFSPEGRLCQLDYAFNAVKLAGITSVGVRGDDSVYVLTHRK-EDKLHDPT 77
Query: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
++ + ++T IG++ +GM D R + +++R A ++ + + L + A Q
Sbjct: 78 TITNLFAITDRIGLLATGMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQI 137
Query: 121 FTQSGGVRPFGVSLLIAGYDDNG--PQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRY 178
TQ +RP+GV +I G D+ P+L+ DP+G +F+ KA++ G FLE+R
Sbjct: 138 RTQHAQIRPYGVVSMIFGIDEEKGTPELFTCDPAGQFFAHKATSAGPKEKEVMNFLEERM 197
Query: 179 TEDMELDDAIHTAIL--TLKEGYEGQISANNIEIGVIRSDREFKVLTPAEIK 228
L + LK EG A E+G I+ L P + K
Sbjct: 198 KSKPSLSSGTTKGLAKSALKHVLEGDFYAREFELGFIKKGDPTVTLHPVKFK 249
>Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S
proteasome alpha subunit C) (20S proteasome subunit
alpha-3)
Length = 207
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 82/132 (62%), Gaps = 1/132 (0%)
Query: 5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPS-ILVDETSVQ 63
+Y +T FSP G+L Q+++A+ A+G+ ++L + AA+GVV+ EKK+ S +L S +
Sbjct: 55 RYDSRMTIFSPEGRLYQVQYAMEAIGNAGSALCVLAADGVVLVGEKKVTSKLLQTSCSAE 114
Query: 64 KIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQ 123
K+ + ++ +G+ D +L+ +R AQ+Y Y+E IPV QL++ Q +TQ
Sbjct: 115 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYILSYQEPIPVEQLIQSLCHTKQGYTQ 174
Query: 124 SGGVRPFGVSLL 135
GG+RPFGVS L
Sbjct: 175 FGGLRPFGVSFL 186
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,364,584
Number of extensions: 282831
Number of successful extensions: 521
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 13
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)