BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0580000 Os02g0580000|J023062N09
(136 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0580000 Protein of unknown function Cys-rich family pr... 283 2e-77
Os02g0579800 Similar to Fw2.2 191 2e-49
Os03g0830500 Similar to PGPS/D12 154 2e-38
Os03g0830200 Protein of unknown function Cys-rich family pr... 150 2e-37
Os04g0461600 Similar to Fw2.2 150 2e-37
Os02g0763000 Protein of unknown function Cys-rich family pr... 142 9e-35
Os06g0266300 140 3e-34
Os10g0112100 Protein of unknown function Cys-rich family pr... 124 2e-29
Os03g0829900 118 1e-27
Os03g0830300 Similar to Fw2.2 103 3e-23
Os03g0829800 Similar to Placenta-specific gene 8 protein (C... 92 8e-20
Os02g0286933 Protein of unknown function Cys-rich family pr... 87 3e-18
Os01g0267400 Protein of unknown function Cys-rich family pr... 69 1e-12
>Os02g0580000 Protein of unknown function Cys-rich family protein
Length = 136
Score = 283 bits (725), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MQDQAAPVPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVF 60
MQDQAAPVPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVF
Sbjct: 1 MQDQAAPVPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVF 60
Query: 61 LVTGCSCIYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLGN 120
LVTGCSCIYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLGN
Sbjct: 61 LVTGCSCIYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLGN 120
Query: 121 RKFNSTANYQLQIIYN 136
RKFNSTANYQLQIIYN
Sbjct: 121 RKFNSTANYQLQIIYN 136
>Os02g0579800 Similar to Fw2.2
Length = 162
Score = 191 bits (484), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 1 MQDQAAPVPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVF 60
MQ + WST LF+CFDD NC +T LCPCITFGQIAEI+DRGSSSCGTSG+LYALV
Sbjct: 18 MQGKVPLAAWSTGLFNCFDDCGNCCVTCLCPCITFGQIAEIIDRGSSSCGTSGALYALVM 77
Query: 61 LVTGCSCIYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
L+TGC+C+YSC YR+K+RSQYGLQE PC DC VH +CEPCAL QEYRELKKRGFDM+LG
Sbjct: 78 LLTGCNCVYSCFYRAKMRSQYGLQEKPCADCPVHFFCEPCALSQEYRELKKRGFDMNLG 136
>Os03g0830500 Similar to PGPS/D12
Length = 141
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 87/117 (74%), Gaps = 1/117 (0%)
Query: 4 QAAPVPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVT 63
+ + WST L DCFDD C MT CPCITFG++AE+VDRGS+SCGTSG+LYAL+ VT
Sbjct: 3 KPSAAAWSTGLLDCFDDCGLCCMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVT 62
Query: 64 GCSCIYSCIYRSKLRSQYGL-QETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
GC +YSC+YR K+R+QYGL + C DC VH WC CALCQEYREL RG+D LG
Sbjct: 63 GCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLG 119
>Os03g0830200 Protein of unknown function Cys-rich family protein
Length = 150
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/126 (60%), Positives = 87/126 (69%), Gaps = 8/126 (6%)
Query: 2 QDQAAPV--------PWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSG 53
+ AAPV WST L DCFDD C +T CPCITFG++AE+VDRGS+SCGT G
Sbjct: 3 KPSAAPVTGVPVGSAAWSTGLCDCFDDCGLCCLTCWCPCITFGRVAEMVDRGSTSCGTGG 62
Query: 54 SLYALVFLVTGCSCIYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRG 113
+LY L+ TGC IYSC YR K+R+QYGL E C DC VH CEPCALCQEYREL RG
Sbjct: 63 ALYGLLCAFTGCQWIYSCTYRGKMRTQYGLAEAGCADCCVHFCCEPCALCQEYRELVARG 122
Query: 114 FDMSLG 119
+D LG
Sbjct: 123 YDPKLG 128
>Os04g0461600 Similar to Fw2.2
Length = 179
Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 84/110 (76%)
Query: 10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIY 69
WS+ L DC+DD C +T+ CPC+ FG+IAEIVD+G++SC G+LY L+ + TG +C Y
Sbjct: 45 WSSGLCDCYDDVGGCCLTFFCPCVAFGRIAEIVDQGATSCCARGTLYMLLAMATGFACAY 104
Query: 70 SCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
SC YRS+L QYGLQE PC DC VH C PCALCQEYRELK RGFDMSLG
Sbjct: 105 SCCYRSRLHQQYGLQEKPCGDCCVHWCCGPCALCQEYRELKSRGFDMSLG 154
>Os02g0763000 Protein of unknown function Cys-rich family protein
Length = 181
Score = 142 bits (357), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 82/110 (74%), Gaps = 1/110 (0%)
Query: 10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIY 69
WST LF C DD NC +T +CPCITFGQ+A+IVD+G+ C SG+ YAL+ +G C+Y
Sbjct: 44 WSTGLFHCMDDPGNCLITCVCPCITFGQVADIVDKGTCPCLASGTAYALL-CASGMGCLY 102
Query: 70 SCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
SC YRSK+R+Q+ L E CPD LVH CE CALCQEYRELK RGFD+ +G
Sbjct: 103 SCFYRSKMRAQFDLDEGDCPDFLVHFCCEYCALCQEYRELKNRGFDLGIG 152
>Os06g0266300
Length = 417
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIY 69
WS LFDCF DS C +T CPCITFG+IAEIVD+GS+SC G+LY L+ + GC +Y
Sbjct: 155 WSVKLFDCFGDSGTCCLTCWCPCITFGRIAEIVDKGSTSCCMHGTLYVLLATI-GCQWLY 213
Query: 70 SCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
+C RS +R+QY LQ++PC DC VH +C+ CALCQEY+EL+KRGF+MS G
Sbjct: 214 ACTKRSSMRAQYNLQQSPCLDCCVHFFCDSCALCQEYKELEKRGFNMSKG 263
>Os10g0112100 Protein of unknown function Cys-rich family protein
Length = 186
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTG--CSC 67
W+T L DC DD + C M CPCI GQIAEIVDRGSSSC + LY LVF V+ C
Sbjct: 50 WTTALCDCADDCNTCCMACWCPCIPVGQIAEIVDRGSSSCALNAVLYCLVFHVSAGMCQW 109
Query: 68 IYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
+YSC YR++LR+ Y L ETPC DCLV C+ C++ Q +RELK RG D +LG
Sbjct: 110 VYSCAYRARLRAAYDLPETPCSDCLVTFCCQTCSIAQMHRELKNRGHDPNLG 161
>Os03g0829900
Length = 136
Score = 118 bits (295), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 70/110 (63%)
Query: 10 WSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSCIY 69
WS+ LF CF+D C +T +CPCITFG+ AEIV RG +C +G + L+ C C+Y
Sbjct: 9 WSSGLFACFNDCEVCCLTTVCPCITFGRSAEIVSRGERTCCAAGVMCVLLGFFAHCHCLY 68
Query: 70 SCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
SC YR K+R + L E PC DC VH C CALCQEYR LK G+ SLG
Sbjct: 69 SCCYRGKMRDSFHLPEDPCCDCCVHALCLQCALCQEYRHLKSLGYKPSLG 118
>Os03g0830300 Similar to Fw2.2
Length = 146
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 8 VPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSC 67
WST L DCFDD C T CPCITFG++AEIVDRGS+S GT G+LYAL+ GC
Sbjct: 17 AAWSTGLCDCFDDCGLCCTTCWCPCITFGRVAEIVDRGSTSFGTGGALYALL----GC-- 70
Query: 68 IYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
+C YR K+R+Q+GL + C DC VH CE CALCQEYREL RG+D LG
Sbjct: 71 --TCTYRGKMRAQHGLGDAACGDCCVHCCCESCALCQEYRELVARGYDPKLG 120
>Os03g0829800 Similar to Placenta-specific gene 8 protein (C15 protein)
Length = 143
Score = 92.4 bits (228), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 8 VPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSC 67
PWS+ L DCFDD C MTW CPCITFG++AEIVDRGS+SCG SG+LY + ++TG
Sbjct: 19 APWSSGLCDCFDDYGLCCMTWWCPCITFGRVAEIVDRGSTSCGHSGALYVFLAVITGFQW 78
Query: 68 IYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
+Y + R R L+ EYREL RG+D LG
Sbjct: 79 MYLHLPRQDARPVRPLRRAL---------RRLLHPLLEYRELAARGYDPKLG 121
>Os02g0286933 Protein of unknown function Cys-rich family protein
Length = 220
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 66/116 (56%), Gaps = 4/116 (3%)
Query: 10 WSTDLFDCFDDS--SNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGCSC 67
W T L DCF D S C W P ++ I EIVD+G + +Y L+ G
Sbjct: 91 WQTSLCDCFGDGCESFCLSAWF-PWLSISCIGEIVDQGFTEWCCICFIY-LIAAYFGVWW 148
Query: 68 IYSCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLGNRKF 123
Y+ YR KLR+QYGL E+P PDCL HL+C CAL QE+REL RG+++ R++
Sbjct: 149 AYAGWYRGKLRAQYGLPESPLPDCLTHLFCHWCALAQEHRELAARGYNVGTAGRRW 204
>Os01g0267400 Protein of unknown function Cys-rich family protein
Length = 129
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 25 FMTWLCPCITFGQIAEIVDRGS--SSCGTSGSLYAL------------VFLVTGCSCI-Y 69
F+ CPC FG+ A+ + G+ SC T L+ L V V G + Y
Sbjct: 6 FIGATCPCFLFGRNAQFLGSGTLAGSCTTHCMLWGLLTSLCCVFTGGLVLAVPGSAVACY 65
Query: 70 SCIYRSKLRSQYGLQETPCPDCLVHLWCEPCALCQEYRELKKR 112
+C YR LR++Y L E PC D HL+C CA+CQEYRE+++R
Sbjct: 66 ACGYRQALRAKYNLPEAPCGDLTTHLFCHLCAICQEYREIRER 108
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.138 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,031,607
Number of extensions: 196415
Number of successful extensions: 479
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 14
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 150 (62.4 bits)