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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0580000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0326) R2 : 0.00612
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.115 (0.0686) R2dN8 : 0.00791 R2N8 : 0.00612
σ : 0.614
deviance : 172.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.24 0.6 2.92 -0.157 0.0469 -0.549 -0.535 1.95 0.0884 4.08 1 16 -- --
165.71 0.6 2.9 -0.0875 0.0482 -0.409 -0.753 -- 0.111 3.89 1.166 15 -- --
164.02 0.596 2.92 -0.157 0.0465 -0.553 -- 2.15 0.0882 4.28 1.021 16 -- --
167.34 0.602 2.9 -0.0742 0.0564 -0.389 -- -- 0.116 5.09 1.131 15 -- --
164 0.596 2.92 -0.166 -- -0.549 -- 1.9 0.0939 -- 1.147 16 -- --
169.92 0.611 2.9 -0.0305 0.179 -- -0.689 -- 0.105 4.25 -- -- -- --
171.23 0.613 2.9 -0.0235 0.177 -- -- -- 0.109 4.6 -- -- -- --
167.46 0.603 2.9 -0.0773 -- -0.42 -- -- 0.117 -- 1.157 15 -- --
167.48 0.603 2.89 -- 0.0559 -0.381 -- -- 0.123 5.16 1.146 15 -- --
172.9 0.614 2.9 -0.0167 -- -- -- -- 0.113 -- -- -- -- --
171.24 0.612 2.9 -- 0.177 -- -- -- 0.111 4.6 -- -- -- --
167.62 0.603 2.9 -- -- -0.411 -- -- 0.125 -- 1.168 15 -- --
172.9 0.614 2.9 -- -- -- -- -- 0.115 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.18 atmosphere 1015.0 30 < th dose independent rect. 3 23
2 156.27 humidity 90.0 30 > th dose dependent rect. 2 1
3 156.37 temperature 20.0 10 > th dose independent rect. 2 1
6 156.43 humidity 90.0 30 > th dose independent rect. 2 1
8 156.44 wind 3.0 30 < th dose independent rect. 2 1
13 156.48 precipitation 0.1 30 < th dose independent rect. 3 23
15 156.48 precipitation 0.1 30 < th dose dependent rect. 3 23
19 156.50 wind 7.0 30 < th dose dependent rect. 2 1
21 156.51 wind 1.0 30 > th dose independent rect. 2 1
23 156.51 atmosphere 1015.0 30 < th dose dependent rect. 2 1
25 156.52 temperature 10.0 30 > th dose independent rect. 2 1
27 156.52 temperature 30.0 30 < th dose independent rect. 2 1
28 156.52 humidity 50.0 30 > th dose independent rect. 2 1
31 156.52 atmosphere 995.0 30 > th dose independent rect. 2 1
33 156.52 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 156.52 radiation 1.0 30 < th dose independent rect. 2 1
40 156.52 precipitation 0.1 30 < th dose independent rect. 2 1
41 156.52 temperature 10.0 30 > th dose independent rect. 3 23
42 156.52 temperature 10.0 30 > th dose dependent rect. 2 1
44 156.52 radiation 1.0 30 < th dose dependent rect. 2 1
49 156.52 precipitation 0.1 30 < th dose dependent rect. 2 1
52 156.54 atmosphere 995.0 30 > th dose dependent rect. 2 1
53 156.54 atmosphere 1005.0 30 > th dose dependent rect. 2 1
59 156.58 temperature 30.0 30 < th dose dependent rect. 2 1
79 156.74 atmosphere 995.0 30 > th dose independent rect. 3 23
107 156.82 radiation 1.0 14400 < th dose dependent rect. 3 1
119 157.11 wind 9.0 1440 < th dose independent rect. 3 1
120 157.11 temperature 10.0 1440 > th dose independent rect. 3 1
123 157.11 temperature 30.0 1440 < th dose independent rect. 3 1
127 157.11 humidity 50.0 1440 > th dose independent rect. 3 1
136 157.11 atmosphere 995.0 1440 > th dose independent rect. 3 1
137 157.11 radiation 1.0 1440 < th dose independent rect. 3 1
157 157.11 temperature 10.0 1440 > th dose independent rect. 4 23
160 157.11 radiation 1.0 1440 < th dose dependent rect. 3 1
178 157.72 wind 9.0 30 < th dose independent rect. 3 23
189 159.24 humidity 50.0 30 > th dose independent rect. 3 23
196 160.42 wind 1.0 270 < th dose dependent rect. 11 1
202 160.89 radiation 40.0 30 < th dose dependent rect. 3 23
203 160.93 radiation 40.0 30 < th dose independent rect. 3 23
209 161.29 humidity 90.0 90 < th dose independent rect. 2 1
210 161.31 wind 1.0 10 < th dose independent rect. 6 21
212 161.44 temperature 25.0 270 < th dose dependent rect. 10 3
213 161.47 radiation 10.0 10 > th dose independent rect. 6 1
239 161.47 radiation 10.0 10 > th dose dependent rect. 6 1
265 161.64 wind 1.0 270 < th dose independent rect. 11 1
270 161.88 temperature 25.0 270 < th dose dependent rect. 11 1
276 162.09 humidity 90.0 720 > th dose dependent rect. 10 3
277 162.10 humidity 90.0 720 > th dose independent rect. 10 3
287 162.45 precipitation 0.1 720 > th dose independent rect. 9 4
288 162.45 precipitation 0.1 720 > th dose dependent rect. 9 4
291 162.49 humidity 90.0 270 > th dose independent rect. 10 1
293 162.49 precipitation 0.1 270 > th dose independent rect. 9 1
300 162.49 precipitation 0.1 270 > th dose dependent rect. 9 1
313 162.53 humidity 90.0 270 > th dose dependent rect. 10 1
324 162.68 wind 1.0 10 < th dose independent rect. 9 18
328 162.71 radiation 10.0 30 < th dose dependent rect. 3 23
329 162.72 atmosphere 1005.0 10 > th dose dependent rect. 2 5
331 162.74 wind 1.0 10 > th dose independent rect. 7 23
376 163.17 temperature 30.0 30 < th dose independent rect. 3 23
379 163.23 wind 1.0 10 < th dose dependent rect. 11 1
388 163.35 atmosphere 1005.0 270 > th dose dependent rect. 23 5
397 163.39 wind 1.0 30 > th dose independent rect. 3 23
418 163.75 radiation 10.0 30 < th dose independent rect. 3 23
428 163.85 temperature 10.0 720 > th dose independent rect. 7 8
429 163.85 atmosphere 1015.0 720 < th dose independent rect. 7 8
430 163.85 temperature 10.0 720 > th dose independent rect. 15 16
431 163.86 wind 9.0 720 < th dose independent rect. 19 8
433 163.88 atmosphere 995.0 720 > th dose independent rect. 7 8
435 163.88 radiation 1.0 720 < th dose dependent rect. 19 8
436 163.89 temperature 10.0 720 > th dose independent rect. 19 8
437 163.89 temperature 30.0 720 < th dose independent rect. 19 8
438 163.89 humidity 50.0 720 > th dose independent rect. 19 8
439 163.89 atmosphere 995.0 720 > th dose independent rect. 19 8
440 163.89 radiation 1.0 720 < th dose independent rect. 19 8
445 163.89 temperature 10.0 720 > th dose independent rect. 3 16
453 163.93 precipitation 0.1 720 < th dose independent rect. 15 16
456 163.93 precipitation 0.1 720 < th dose dependent rect. 15 16
469 164.06 wind 1.0 10 < th dose independent rect. 22 5
470 164.06 wind 1.0 10 < th dose independent rect. 12 15
477 164.09 humidity 50.0 30 > th dose dependent rect. 3 23
485 164.10 atmosphere 995.0 720 > th dose independent rect. 3 16
487 164.11 atmosphere 995.0 720 > th dose independent rect. 15 16
493 164.17 wind 1.0 10 < th dose independent rect. 11 1
517 164.35 radiation 30.0 10 > th dose dependent sin 14 NA
525 164.40 precipitation 0.1 720 < th dose independent rect. 19 8
526 164.40 precipitation 0.1 720 < th dose dependent rect. 19 8
532 164.44 wind 3.0 30 < th dose dependent rect. 6 1
535 164.46 atmosphere 1000.0 90 < th dose independent rect. 13 1
536 164.46 atmosphere 1000.0 10 < th dose dependent rect. 13 1
543 164.47 wind 1.0 10 < th dose independent rect. 13 1
546 164.47 wind 1.0 10 < th dose dependent rect. 13 1
561 164.52 atmosphere 1005.0 30 > th dose dependent rect. 6 1
575 164.56 wind 1.0 10 < th dose independent rect. 2 8
593 164.70 wind 1.0 10 > th dose independent no NA NA
636 164.79 temperature 10.0 30 > th dose dependent rect. 3 23
650 164.86 precipitation 0.1 720 > th dose independent rect. 6 1
651 164.86 precipitation 0.1 720 > th dose dependent rect. 6 1
661 164.91 wind 1.0 10 > th dose independent rect. 22 23
666 164.91 wind 3.0 30 < th dose dependent rect. 2 8
667 164.91 radiation 30.0 30 > th dose dependent rect. 13 23
668 164.92 wind 1.0 10 > th dose independent sin 6 NA
669 164.92 precipitation 0.1 720 < th dose independent rect. 7 8
670 164.92 precipitation 0.1 720 < th dose dependent rect. 7 8
673 164.93 humidity 60.0 30 > th dose independent rect. 3 10
691 165.00 wind 1.0 10 > th dose independent sin 17 NA
714 165.10 wind 1.0 10 < th dose independent rect. 2 21
721 165.13 radiation 40.0 10 > th dose dependent rect. 14 1
766 165.16 wind 1.0 10 < th dose independent rect. 2 16
775 165.17 wind 1.0 10 < th dose independent rect. 2 14
780 165.17 radiation 30.0 10 > th dose dependent rect. 11 5
800 165.18 wind 1.0 10 < th dose independent rect. 2 12
802 165.18 radiation 40.0 720 < th dose independent rect. 17 16
825 165.22 humidity 80.0 30 > th dose dependent rect. 6 1
862 165.29 wind 1.0 10 > th dose independent rect. 16 14
863 165.29 wind 1.0 30 > th dose dependent rect. 2 1
868 165.30 atmosphere 1010.0 10 < th dose independent rect. 22 13
954 165.40 precipitation 0.1 1440 < th dose independent rect. 9 1
955 165.40 precipitation 0.1 1440 < th dose dependent rect. 9 1