Os02g0579800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fw2.2.
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Os02g0579800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fw2.2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.74 | 0.588 | 12.2 | -1.1 | 0.797 | 1.6 | 0.578 | -0.913 | -0.0167 | 22 | 21.12 | 3865 | -- | -- |
| 158.16 | 0.586 | 12.2 | -0.939 | 0.776 | 1.74 | 0.469 | -- | -0.0206 | 21.9 | 21.1 | 3981 | -- | -- |
| 158.02 | 0.585 | 12.2 | -1.11 | 0.796 | 1.61 | -- | -0.842 | -0.0167 | 21.9 | 21.12 | 3870 | -- | -- |
| 158.95 | 0.587 | 12.2 | -0.938 | 0.809 | 1.73 | -- | -- | 0.0158 | 21.9 | 21.18 | 3986 | -- | -- |
| 195.38 | 0.651 | 12.2 | -1.08 | -- | 1.68 | -- | -0.681 | -0.0123 | -- | 21.1 | 3744 | -- | -- |
| 225.02 | 0.703 | 12 | 0.13 | 0.865 | -- | 0.577 | -- | 0.574 | 22.3 | -- | -- | -- | -- |
| 226.35 | 0.705 | 12 | 0.107 | 0.863 | -- | -- | -- | 0.573 | 22.2 | -- | -- | -- | -- |
| 196.13 | 0.652 | 12.1 | -0.936 | -- | 1.8 | -- | -- | 0.00863 | -- | 21.11 | 3747 | -- | -- |
| 170.05 | 0.607 | 12.1 | -- | 0.785 | 1.19 | -- | -- | 0.152 | 21.9 | 22.5 | 3765 | -- | -- |
| 271.6 | 0.77 | 12 | 0.12 | -- | -- | -- | -- | 0.574 | -- | -- | -- | -- | -- |
| 226.66 | 0.704 | 12 | -- | 0.864 | -- | -- | -- | 0.561 | 22.2 | -- | -- | -- | -- |
| 197.65 | 0.655 | 12.1 | -- | -- | 1.23 | -- | -- | 0.182 | -- | 22.3 | 929 | -- | -- |
| 271.98 | 0.77 | 12 | -- | -- | -- | -- | -- | 0.561 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.73 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 2 | 143.22 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 4 | 143.87 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 7 | 144.22 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 8 | 144.45 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 18 | 144.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 30 | 144.49 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 20 | 21 |
| 32 | 144.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 35 | 144.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 14 |
| 36 | 144.50 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 17 |
| 43 | 144.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 48 | 144.60 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 57 | 145.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 58 | 145.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 70 | 145.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 83 | 145.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 86 | 145.42 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 132 | 146.10 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 11 | 20 |
| 139 | 146.19 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 17 |
| 175 | 146.37 | radiation | 1.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 181 | 146.51 | radiation | 1.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 196 | 146.68 | radiation | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 220 | 146.95 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 222 | 146.96 | radiation | 1.0 | 14400 | > th | dose independent | no | NA | NA |
| 301 | 147.09 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 11 | 20 |
| 349 | 147.24 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 17 |
| 432 | 147.76 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 433 | 147.77 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 22 |
| 436 | 147.78 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 438 | 147.78 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 3 | 17 |
| 523 | 148.00 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 526 | 148.01 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 21 |
| 660 | 148.63 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 662 | 148.66 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 673 | 148.66 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 9 |
| 676 | 148.68 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 695 | 148.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 704 | 148.83 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 711 | 148.88 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 715 | 148.89 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 719 | 148.93 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 756 | 149.10 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 834 | 149.40 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 17 |
| 835 | 149.41 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 10 | 21 |
| 912 | 149.82 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 3 | NA |
| 937 | 149.98 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 938 | 149.99 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 940 | 149.99 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 23 |
| 957 | 150.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 17 |
| 978 | 150.10 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 989 | 150.11 | radiation | 1.0 | 14400 | < th | dose dependent | no | NA | NA |
| 991 | 150.11 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 23 |