Os03g0830500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PGPS/D12.
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Os03g0830500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PGPS/D12.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 234.8 | 0.72 | 7.79 | 3.7 | 1.43 | 3.4 | 0.729 | -1.36 | 0.656 | 19.9 | 21.4 | 2241 | -- | -- |
| 238.76 | 0.72 | 7.75 | 4.03 | 1.41 | 3.55 | 0.669 | -- | 0.716 | 19.9 | 21.32 | 2220 | -- | -- |
| 236.33 | 0.716 | 7.79 | 3.7 | 1.43 | 3.41 | -- | -1.27 | 0.66 | 19.9 | 21.4 | 2248 | -- | -- |
| 239.62 | 0.721 | 7.74 | 4.04 | 1.41 | 3.51 | -- | -- | 0.731 | 19.9 | 21.34 | 2209 | -- | -- |
| 345.23 | 0.865 | 7.75 | 3.71 | -- | 3.58 | -- | -0.981 | 0.621 | -- | 21.3 | 2180 | -- | -- |
| 572.88 | 1.12 | 7.51 | 5.72 | 1.61 | -- | 0.731 | -- | 1.77 | 20.4 | -- | -- | -- | -- |
| 574.55 | 1.12 | 7.51 | 5.7 | 1.6 | -- | -- | -- | 1.77 | 20.4 | -- | -- | -- | -- |
| 347.31 | 0.868 | 7.71 | 3.95 | -- | 3.67 | -- | -- | 0.677 | -- | 21.31 | 2170 | -- | -- |
| 341.75 | 0.861 | 7.88 | -- | 1.55 | 5.03 | -- | -- | -0.162 | 20.1 | 18.9 | 27290 | -- | -- |
| 717.95 | 1.25 | 7.47 | 5.69 | -- | -- | -- | -- | 1.75 | -- | -- | -- | -- | -- |
| 1429.57 | 1.77 | 7.65 | -- | 1.58 | -- | -- | -- | 1.13 | 20.7 | -- | -- | -- | -- |
| 457.27 | 0.996 | 7.87 | -- | -- | 5.63 | -- | -- | -0.0225 | -- | 18.3 | 23870 | -- | -- |
| 1571.15 | 1.85 | 7.61 | -- | -- | -- | -- | -- | 1.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 10 |
| 12 | 256.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 26 | 257.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 32 | 258.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 41 | 258.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 42 | 258.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 49 | 259.05 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 58 | 259.73 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 59 | 259.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 65 | 260.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 69 | 260.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 3 |
| 89 | 261.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 90 | 261.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 97 | 261.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 101 | 261.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 11 |
| 111 | 261.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 7 |
| 123 | 262.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 133 | 262.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 170 | 263.59 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 9 |
| 190 | 264.03 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 279 | 265.59 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 300 | 265.87 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 374 | 267.56 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |