BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0830500 Os03g0830500|AK071173
(141 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14870.1 | chr1:5128591-5129458 REVERSE LENGTH=153 143 3e-35
AT5G35525.1 | chr5:13707084-13707818 FORWARD LENGTH=153 131 1e-31
AT1G14880.1 | chr1:5132791-5133663 REVERSE LENGTH=152 120 3e-28
AT3G18460.1 | chr3:6333048-6333948 REVERSE LENGTH=185 119 4e-28
AT3G18470.1 | chr3:6335000-6335698 REVERSE LENGTH=134 116 3e-27
AT1G49030.1 | chr1:18136794-18137846 FORWARD LENGTH=225 109 4e-25
AT3G18450.1 | chr3:6331229-6332118 REVERSE LENGTH=185 107 2e-24
AT1G68610.1 | chr1:25763623-25764105 FORWARD LENGTH=161 99 8e-22
AT1G58320.1 | chr1:21634123-21635303 REVERSE LENGTH=149 96 8e-21
AT1G52200.1 | chr1:19442271-19443407 REVERSE LENGTH=191 86 5e-18
AT1G68630.1 | chr1:25768653-25769458 FORWARD LENGTH=162 84 2e-17
AT2G40935.1 | chr2:17083199-17084216 FORWARD LENGTH=191 63 5e-11
>AT1G14870.1 | chr1:5128591-5129458 REVERSE LENGTH=153
Length = 152
Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/127 (61%), Positives = 88/127 (69%), Gaps = 4/127 (3%)
Query: 2 AKPSAAA-WSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
AKP A WST +T WCPCITFG+VAE+VDRGSTSCGT+GALYAL+A
Sbjct: 8 AKPHAEGEWSTGFCDCFSDCKNCCITFWCPCITFGQVAEIVDRGSTSCGTAGALYALIAV 67
Query: 61 VTGCQFVYSCVYRGKMRAQYGL-GDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLG 119
VTGC +YSC YRGKMRAQY + GDD C DC HF C C+L Q+YREL RGYD LG
Sbjct: 68 VTGCACIYSCFYRGKMRAQYNIKGDD--CTDCLKHFCCELCSLTQQYRELKHRGYDMSLG 125
Query: 120 WDLNVQR 126
W NV+R
Sbjct: 126 WAGNVER 132
>AT5G35525.1 | chr5:13707084-13707818 FORWARD LENGTH=153
Length = 152
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 84/126 (66%), Gaps = 2/126 (1%)
Query: 2 AKPSAAA-WSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
A P A WST +T CPCITFG+VA++VDRG+TSCGT+GALY LLA
Sbjct: 8 ANPHAEGEWSTGFCDCFSDCQNCCITWLCPCITFGQVADIVDRGNTSCGTAGALYVLLAA 67
Query: 61 VTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGW 120
+TGC +YSC+YRGK+RAQY + D C DC HF C CAL QEYREL RG+D LGW
Sbjct: 68 ITGCGCLYSCIYRGKIRAQYNIRGD-GCTDCLKHFCCELCALTQEYRELKHRGFDMSLGW 126
Query: 121 DLNVQR 126
NV++
Sbjct: 127 AGNVEK 132
>AT1G14880.1 | chr1:5132791-5133663 REVERSE LENGTH=152
Length = 151
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 78/126 (61%), Gaps = 2/126 (1%)
Query: 2 AKPSA-AAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
AKP A WST +T CPCITFG+VAE+VDRGS SC +GALY L+
Sbjct: 7 AKPHAQGEWSTGFCDCFSDCRNCCITLCCPCITFGQVAEIVDRGSKSCCAAGALYMLIDL 66
Query: 61 VTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGW 120
+T C +Y+C Y GKMRAQY + D C DC HF CN CAL Q+YREL RG+D LGW
Sbjct: 67 ITSCGRMYACFYSGKMRAQYNIKGD-GCTDCLKHFCCNLCALTQQYRELKHRGFDMSLGW 125
Query: 121 DLNVQR 126
N ++
Sbjct: 126 AGNAEK 131
>AT3G18460.1 | chr3:6333048-6333948 REVERSE LENGTH=185
Length = 184
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 9 WSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVY 68
WS+ +TC PC+T G++AE+VD G+T C T G LY ++ + G FVY
Sbjct: 54 WSSDLFDCMNDSENAVITCLAPCVTLGQIAEIVDEGATPCATGGLLYGMIFFI-GVPFVY 112
Query: 69 SCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQ 125
SC++R KMR +YGL DA D H +C CALCQEYREL RG+DP +GW NVQ
Sbjct: 113 SCMFRAKMRNKYGL-PDAPAPDWITHLFCEHCALCQEYRELKHRGFDPNIGWAGNVQ 168
>AT3G18470.1 | chr3:6335000-6335698 REVERSE LENGTH=134
Length = 133
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 25 MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGD 84
+TC+CPC+TFGR+A++ D G T CG G Y L+ V G ++SC YR K+R+++GL +
Sbjct: 21 LTCFCPCVTFGRIADISDEGRTGCGRCGVFYGLICCVVGLPCLFSCTYRTKIRSKFGLPE 80
Query: 85 DAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQR 126
+DC HF+C CALCQE+REL RG DP +GW N+QR
Sbjct: 81 SPT-SDCVTHFFCECCALCQEHRELKTRGLDPSIGWSGNMQR 121
>AT1G49030.1 | chr1:18136794-18137846 FORWARD LENGTH=225
Length = 224
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Query: 25 MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGD 84
+TC P +TFG++AE++D G+TSCGT+G LY L+ + VY+C +R K+R++YGL
Sbjct: 104 ITCCFPFVTFGQIAEVIDEGATSCGTAGMLYGLICCLFAIPCVYTCTFRTKLRSKYGL-P 162
Query: 85 DAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQR 126
DA D H +C CALCQEYREL RG DP +GW NVQ+
Sbjct: 163 DAPAPDWITHCFCEYCALCQEYRELKNRGLDPSIGWIGNVQK 204
>AT3G18450.1 | chr3:6331229-6332118 REVERSE LENGTH=185
Length = 184
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 9 WSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVY 68
WS+ +T PC+TFG++AE+VD G+T C T+G LY L TG FVY
Sbjct: 52 WSSQLFDCMNDSENAVITLIAPCVTFGQIAEIVDEGATPCATAGLLYGAL-FFTGASFVY 110
Query: 69 SCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQR 126
S ++R ++R ++GL DA D H C ALCQEYREL G+DP LGW NVQ+
Sbjct: 111 SYMFRARIRKKFGL-PDAPAPDWITHLVCMPFALCQEYRELKHHGFDPILGWAGNVQQ 167
>AT1G68610.1 | chr1:25763623-25764105 FORWARD LENGTH=161
Length = 160
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Query: 25 MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGC--QFVYSCVYRGKMRAQYGL 82
+TCWCPC+ FGR+AE+VDRGSTSCG SGA+Y ++ +TG +YSC YR K+RAQY L
Sbjct: 35 LTCWCPCVAFGRIAEVVDRGSTSCGVSGAMYMIIFMLTGYGGSSLYSCFYRTKLRAQYNL 94
Query: 83 GDDAACADCCVHFWCNKCALCQEYRELV-ARGYDPKLGWDLNVQR 126
+ C C C CALCQEYR+L R D +GW N++R
Sbjct: 95 KERPCCDCCVHFC-CEPCALCQEYRQLQHNRDLDLVIGWHGNMER 138
>AT1G58320.1 | chr1:21634123-21635303 REVERSE LENGTH=149
Length = 148
Score = 95.5 bits (236), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 29 CPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGDDAAC 88
CPC+ FGR+AE++D+G TS G +G + ++++ GC + Y+ YR K+R QY L +A C
Sbjct: 38 CPCVAFGRIAEILDKGETSRGLAGLMVVAMSSI-GCGWYYASKYRAKLRHQYAL-PEAPC 95
Query: 89 ADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLN 123
AD +H +C CAL QE+REL RG DP LGW++
Sbjct: 96 ADGAIHCFCCPCALTQEHRELKHRGLDPSLGWNIE 130
>AT1G52200.1 | chr1:19442271-19443407 REVERSE LENGTH=191
Length = 190
Score = 86.3 bits (212), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 8 AWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFV 67
WST +T PC+TFG++AE++D G +C +Y L+ +V
Sbjct: 52 PWSTGLFDCQADQANAVLTTIVPCVTFGQIAEVMDEGEMTCPLGTFMYLLMMPALCSHWV 111
Query: 68 YSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWD 121
YR KMR ++ L + A +DC H C C+LCQEYREL R DP LGW+
Sbjct: 112 MGSKYREKMRRKFNLVE-APYSDCASHVLCPCCSLCQEYRELKIRNLDPSLGWN 164
>AT1G68630.1 | chr1:25768653-25769458 FORWARD LENGTH=162
Length = 161
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 26 TCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGDD 85
T PC++F + E+V+RG+ C +G ++ L + GC ++Y+ R ++R + L ++
Sbjct: 46 TAIMPCVSFAQNVEIVNRGTIPCMNAGLIHLALGFI-GCSWLYAFPNRSRLREHFALPEE 104
Query: 86 AACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQR 126
C D VH +C CA+CQE REL RG DP +GW NV++
Sbjct: 105 P-CRDFLVHLFCTPCAICQESRELKNRGADPSIGWLSNVEK 144
>AT2G40935.1 | chr2:17083199-17084216 FORWARD LENGTH=191
Length = 190
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 22/100 (22%)
Query: 28 WCPCITFGRVAEMVDRGS------TSC------------GTSGALYALLATVTGCQFVYS 69
+CPC FG+ AE++ G+ T C T+GAL L C Y+
Sbjct: 66 FCPCYIFGKNAELLGSGTFAGPCLTHCISWALVNTICCFATNGALLGLPGCFVSC---YA 122
Query: 70 CVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYREL 109
C YR +RA+Y L +A C D HF+C+ CA+CQEYRE+
Sbjct: 123 CGYRKSLRAKYNL-QEAPCGDFVTHFFCHLCAICQEYREI 161
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.137 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,643,512
Number of extensions: 88544
Number of successful extensions: 263
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 12
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)