BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0830500 Os03g0830500|AK071173
(141 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0830500 Similar to PGPS/D12 238 1e-63
Os03g0830200 Protein of unknown function Cys-rich family pr... 179 7e-46
Os02g0579800 Similar to Fw2.2 147 2e-36
Os03g0830300 Similar to Fw2.2 136 5e-33
Os06g0266300 130 3e-31
Os04g0461600 Similar to Fw2.2 122 1e-28
Os02g0580000 Protein of unknown function Cys-rich family pr... 117 2e-27
Os10g0112100 Protein of unknown function Cys-rich family pr... 116 4e-27
Os03g0829900 112 6e-26
Os02g0763000 Protein of unknown function Cys-rich family pr... 112 7e-26
Os03g0829800 Similar to Placenta-specific gene 8 protein (C... 109 5e-25
Os02g0286933 Protein of unknown function Cys-rich family pr... 70 5e-13
>Os03g0830500 Similar to PGPS/D12
Length = 141
Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/141 (85%), Positives = 120/141 (85%)
Query: 1 MAKPSAAAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
MAKPSAAAWST MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT
Sbjct: 1 MAKPSAAAWSTGLLDCFDDCGLCCMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
Query: 61 VTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGW 120
VTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGW
Sbjct: 61 VTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGW 120
Query: 121 DLNVQRGXXXXXXXXVQHMGR 141
DLNVQRG VQHMGR
Sbjct: 121 DLNVQRGAAAAAAPAVQHMGR 141
>Os03g0830200 Protein of unknown function Cys-rich family protein
Length = 150
Score = 179 bits (453), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 103/151 (68%), Gaps = 11/151 (7%)
Query: 1 MAKPSAA----------AWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGT 50
MAKPSAA AWST +TCWCPCITFGRVAEMVDRGSTSCGT
Sbjct: 1 MAKPSAAPVTGVPVGSAAWSTGLCDCFDDCGLCCLTCWCPCITFGRVAEMVDRGSTSCGT 60
Query: 51 SGALYALLATVTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELV 110
GALY LL TGCQ++YSC YRGKMR QYGL +A CADCCVHF C CALCQEYRELV
Sbjct: 61 GGALYGLLCAFTGCQWIYSCTYRGKMRTQYGLA-EAGCADCCVHFCCEPCALCQEYRELV 119
Query: 111 ARGYDPKLGWDLNVQRGXXXXXXXXVQHMGR 141
ARGYDPKLGW LN R VQ+MGR
Sbjct: 120 ARGYDPKLGWHLNADRAAAAGAAPAVQYMGR 150
>Os02g0579800 Similar to Fw2.2
Length = 162
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 3 KPSAAAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVT 62
K AAWST +TC CPCITFG++AE++DRGS+SCGTSGALYAL+ +T
Sbjct: 21 KVPLAAWSTGLFNCFDDCGNCCVTCLCPCITFGQIAEIIDRGSSSCGTSGALYALVMLLT 80
Query: 63 GCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDL 122
GC VYSC YR KMR+QYGL + CADC VHF+C CAL QEYREL RG+D LGW
Sbjct: 81 GCNCVYSCFYRAKMRSQYGL-QEKPCADCPVHFFCEPCALSQEYRELKKRGFDMNLGWHA 139
Query: 123 NVQRGXXXXXXXXVQHM 139
N++R HM
Sbjct: 140 NMERQGHKPAMTMPPHM 156
>Os03g0830300 Similar to Fw2.2
Length = 146
Score = 136 bits (342), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 97/155 (62%), Positives = 101/155 (65%), Gaps = 23/155 (14%)
Query: 1 MAKPSA----------AAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGT 50
MAKPSA AAWST TCWCPCITFGRVAE+VDRGSTS GT
Sbjct: 1 MAKPSAGAVTGVPIGSAAWSTGLCDCFDDCGLCCTTCWCPCITFGRVAEIVDRGSTSFGT 60
Query: 51 SGALYALLATVTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELV 110
GALYALL GC +C YRGKMRAQ+GLGD AAC DCCVH C CALCQEYRELV
Sbjct: 61 GGALYALL----GC----TCTYRGKMRAQHGLGD-AACGDCCVHCCCESCALCQEYRELV 111
Query: 111 ARGYDPKLGWDLNVQRG----XXXXXXXXVQHMGR 141
ARGYDPKLGW LNV+RG VQHMGR
Sbjct: 112 ARGYDPKLGWHLNVERGAAAAAAAAAAPAVQHMGR 146
>Os06g0266300
Length = 417
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 75/97 (77%), Gaps = 2/97 (2%)
Query: 25 MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGD 84
+TCWCPCITFGR+AE+VD+GSTSC G LY LLAT+ GCQ++Y+C R MRAQY L
Sbjct: 171 LTCWCPCITFGRIAEIVDKGSTSCCMHGTLYVLLATI-GCQWLYACTKRSSMRAQYNL-Q 228
Query: 85 DAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWD 121
+ C DCCVHF+C+ CALCQEY+EL RG++ GW+
Sbjct: 229 QSPCLDCCVHFFCDSCALCQEYKELEKRGFNMSKGWE 265
>Os04g0461600 Similar to Fw2.2
Length = 179
Score = 122 bits (305), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 3 KPSAAAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVT 62
P A+WS+ +T +CPC+ FGR+AE+VD+G+TSC G LY LLA T
Sbjct: 39 NPPVASWSSGLCDCYDDVGGCCLTFFCPCVAFGRIAEIVDQGATSCCARGTLYMLLAMAT 98
Query: 63 GCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDL 122
G YSC YR ++ QYGL + C DCCVH+ C CALCQEYREL +RG+D LGW
Sbjct: 99 GFACAYSCCYRSRLHQQYGL-QEKPCGDCCVHWCCGPCALCQEYRELKSRGFDMSLGWQG 157
Query: 123 NVQR 126
N++R
Sbjct: 158 NMER 161
>Os02g0580000 Protein of unknown function Cys-rich family protein
Length = 136
Score = 117 bits (293), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 5 SAAAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGC 64
+ WST MT CPCITFG++AE+VDRGS+SCGTSG+LYAL+ VTGC
Sbjct: 6 APVPWSTDLFDCFDDSSNCFMTWLCPCITFGQIAEIVDRGSSSCGTSGSLYALVFLVTGC 65
Query: 65 QFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLG 119
+YSC+YR K+R+QYGL + C DC VH WC CALCQEYREL RG+D LG
Sbjct: 66 SCIYSCIYRSKLRSQYGL-QETPCPDCLVHLWCEPCALCQEYRELKKRGFDMSLG 119
>Os10g0112100 Protein of unknown function Cys-rich family protein
Length = 186
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Query: 1 MAKPSAAAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
MA + AW+T M CWCPCI G++AE+VDRGS+SC + LY L+
Sbjct: 42 MAPAAGGAWTTALCDCADDCNTCCMACWCPCIPVGQIAEIVDRGSSSCALNAVLYCLVFH 101
Query: 61 VTG--CQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKL 118
V+ CQ+VYSC YR ++RA Y L + C+DC V F C C++ Q +REL RG+DP L
Sbjct: 102 VSAGMCQWVYSCAYRARLRAAYDL-PETPCSDCLVTFCCQTCSIAQMHRELKNRGHDPNL 160
Query: 119 GWDLNVQR 126
GW++N +R
Sbjct: 161 GWEVNSRR 168
>Os03g0829900
Length = 136
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 1 MAKPSAAAWSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLAT 60
MA+P WS+ +T CPCITFGR AE+V RG +C +G + LL
Sbjct: 1 MARPQHNDWSSGLFACFNDCEVCCLTTVCPCITFGRSAEIVSRGERTCCAAGVMCVLLGF 60
Query: 61 VTGCQFVYSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGW 120
C +YSC YRGKMR + L +D C DCCVH C +CALCQEYR L + GY P LGW
Sbjct: 61 FAHCHCLYSCCYRGKMRDSFHLPED-PCCDCCVHALCLQCALCQEYRHLKSLGYKPSLGW 119
Query: 121 DLNVQR 126
N Q
Sbjct: 120 LGNNQH 125
>Os02g0763000 Protein of unknown function Cys-rich family protein
Length = 181
Score = 112 bits (281), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 75/119 (63%), Gaps = 4/119 (3%)
Query: 9 WSTXXXXXXXXXXXXXMTCWCPCITFGRVAEMVDRGSTSCGTSGALYALL-ATVTGCQFV 67
WST +TC CPCITFG+VA++VD+G+ C SG YALL A+ GC +
Sbjct: 44 WSTGLFHCMDDPGNCLITCVCPCITFGQVADIVDKGTCPCLASGTAYALLCASGMGC--L 101
Query: 68 YSCVYRGKMRAQYGLGDDAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQR 126
YSC YR KMRAQ+ L D+ C D VHF C CALCQEYREL RG+D +GW NV R
Sbjct: 102 YSCFYRSKMRAQFDL-DEGDCPDFLVHFCCEYCALCQEYRELKNRGFDLGIGWAANVDR 159
>Os03g0829800 Similar to Placenta-specific gene 8 protein (C15 protein)
Length = 143
Score = 109 bits (273), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 68/117 (58%), Gaps = 10/117 (8%)
Query: 25 MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGD 84
MT WCPCITFGRVAE+VDRGSTSCG SGALY LA +TG Q++Y + R
Sbjct: 37 MTWWCPCITFGRVAEIVDRGSTSCGHSGALYVFLAVITGFQWMYLHLPR----------Q 86
Query: 85 DAACADCCVHFWCNKCALCQEYRELVARGYDPKLGWDLNVQRGXXXXXXXXVQHMGR 141
DA EYREL ARGYDPKLGW LN++R VQHMGR
Sbjct: 87 DARPVRPLRRALRRLLHPLLEYRELAARGYDPKLGWHLNMERRAAAAAAPAVQHMGR 143
>Os02g0286933 Protein of unknown function Cys-rich family protein
Length = 220
Score = 70.1 bits (170), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 25 MTCWCPCITFGRVAEMVDRGSTSCGTSGALYALLATVTGCQFVYSCVYRGKMRAQYGLGD 84
++ W P ++ + E+VD+G T +Y L+A G + Y+ YRGK+RAQYGL
Sbjct: 108 LSAWFPWLSISCIGEIVDQGFTEWCCICFIY-LIAAYFGVWWAYAGWYRGKLRAQYGL-P 165
Query: 85 DAACADCCVHFWCNKCALCQEYRELVARGYD 115
++ DC H +C+ CAL QE+REL ARGY+
Sbjct: 166 ESPLPDCLTHLFCHWCALAQEHRELAARGYN 196
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.137 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,363,362
Number of extensions: 151271
Number of successful extensions: 403
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 13
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)