BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0577100 Os02g0577100|AK071239
(250 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0577100 RINGv domain containing protein 456 e-129
Os08g0436200 RINGv domain containing protein 245 2e-65
Os11g0600700 Similar to RING domain protein 242 2e-64
Os01g0121200 RINGv domain containing protein 152 2e-37
Os01g0894600 RINGv domain containing protein 131 5e-31
Os05g0552400 RINGv domain containing protein 114 1e-25
Os01g0303600 RINGv domain containing protein 108 4e-24
Os05g0355300 Zinc finger, RING-type domain containing protein 94 1e-19
Os09g0413000 Hypothetical protein 86 2e-17
>Os02g0577100 RINGv domain containing protein
Length = 250
Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/250 (88%), Positives = 222/250 (88%)
Query: 1 MGDHVAVDVGGLMASRGAGEEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRE 60
MGDHVAVDVGGLMASRGAGEEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRE
Sbjct: 1 MGDHVAVDVGGLMASRGAGEEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRE 60
Query: 61 CVQRWCNEKGDIICEICHVSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRIL 120
CVQRWCNEKGDIICEICHVSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRIL
Sbjct: 61 CVQRWCNEKGDIICEICHVSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRIL 120
Query: 121 AMAAAQHRLLEDEYDEYTATNNNAAAFCRXXXXXXXXXXXXXXXXXXXXXDDEDDASAIF 180
AMAAAQHRLLEDEYDEYTATNNNAAAFCR DDEDDASAIF
Sbjct: 121 AMAAAQHRLLEDEYDEYTATNNNAAAFCRSIFLILMALLLLRHTLTITSSDDEDDASAIF 180
Query: 181 SLFLLRAAGFLLPCYIMAWAISIMXXXXXXXEEAMLLPTEVAIILHRNGRTMQFAVAPES 240
SLFLLRAAGFLLPCYIMAWAISIM EEAMLLPTEVAIILHRNGRTMQFAVAPES
Sbjct: 181 SLFLLRAAGFLLPCYIMAWAISIMQRQRQRQEEAMLLPTEVAIILHRNGRTMQFAVAPES 240
Query: 241 PTTPHPEQGQ 250
PTTPHPEQGQ
Sbjct: 241 PTTPHPEQGQ 250
>Os08g0436200 RINGv domain containing protein
Length = 276
Score = 245 bits (625), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/237 (54%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 12 LMASRGAGEEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGD 71
L++ R + E LI VECRICQEED NLESPCAC+GSLKYAHR CVQRWC+EKGD
Sbjct: 41 LLSVRESMGAEEEPLIQTVECRICQEEDNISNLESPCACTGSLKYAHRACVQRWCDEKGD 100
Query: 72 IICEICHVSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLE 131
+ CEICH YK GYTA P+ H DETTI+IS G W+I+G DLHDPRI+AM AQ+ ++E
Sbjct: 101 LTCEICHEPYKHGYTALPRAHPDETTIDISGG-WTITGTAFDLHDPRIIAM--AQNHIME 157
Query: 132 DEYDEYTATNNNAAAFCRXXXXXXXXXXXXXXXXXXXXXDDEDDASAIFSLFLLRAAGFL 191
+YD+Y+ TN ++AAFCR +DEDDAS++F LFLLR GFL
Sbjct: 158 ADYDDYSVTNASSAAFCR-SAALILMALLVLRHVLVLTDEDEDDASSMFLLFLLRVTGFL 216
Query: 192 LPCYIMAWAISIMXXXXXXXEEAMLLPTEVAIILHRNGRT-MQFAVAPESPTTPHPE 247
LP YIMAWAI+I+ A L TEVA IL R M F +AP+SP TP E
Sbjct: 217 LPFYIMAWAINILQGRRRRQVAAALAATEVAFILQSGQRRGMNFTIAPDSPATPQHE 273
>Os11g0600700 Similar to RING domain protein
Length = 278
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/271 (51%), Positives = 158/271 (58%), Gaps = 37/271 (13%)
Query: 1 MGDHVAVDVGGLMASRGAGEEETGA---------------------------LIGMVECR 33
MGDHV V+V GL GA E+ + A LI ECR
Sbjct: 1 MGDHVVVNVEGLGNDGGAVEKPSEAVNSSVVAAASLSTTVDTVEEGGGEEEPLIQAAECR 60
Query: 34 ICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTAPPQVHH 93
ICQEED KNLE PCACSGSLKYAHR CVQRWCNEKGDI CEICH YK GYTAPP+V
Sbjct: 61 ICQEEDSIKNLEKPCACSGSLKYAHRACVQRWCNEKGDITCEICHEQYKHGYTAPPRVEP 120
Query: 94 DETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAAFCRXXXX 153
D+T I+I GDW+ DPRI+A+AAAQ RLLE EYDEY T+ + AAFCR
Sbjct: 121 DDTIIDI-GGDWA--------RDPRIIAVAAAQRRLLETEYDEYAGTDASGAAFCRSAAL 171
Query: 154 XXXXXXXXXXXXXXXXXDDEDDASAIFSLFLLRAAGFLLPCYIMAWAISIMXXXXXXXEE 213
+ +DDAS +FSLFLLRAAGFLLPCYIMAW SI+ E
Sbjct: 172 ILMALLLLRHALSISDNEGDDDASTMFSLFLLRAAGFLLPCYIMAWIFSILHRRRQRQEA 231
Query: 214 AMLLPTEVAIILHR-NGRTMQFAVAPESPTT 243
A + EVA IL G +QF +AP+SP T
Sbjct: 232 AAIAAAEVAFILQSAQGHALQFTIAPDSPAT 262
>Os01g0121200 RINGv domain containing protein
Length = 269
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 4/185 (2%)
Query: 19 GEEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICH 78
G+ + G+ MVECRICQEED ++E+PCAC GSLKYAHR+C+QRWCNEKGD +CEIC
Sbjct: 42 GDGDGGSARKMVECRICQEEDWDTSMEAPCACCGSLKYAHRKCIQRWCNEKGDTVCEICL 101
Query: 79 VSYKPGYTAPPQVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYT 138
+KPGYTAP Q+ H + G+W I+ R DLHD +I+ M ++ + D Y++Y
Sbjct: 102 QQFKPGYTAPQQLFHYGSIPMNFRGNWEIA--RQDLHDSQIITMVPSERDFM-DGYEDYL 158
Query: 139 ATNNNAAAF-CRXXXXXXXXXXXXXXXXXXXXXDDEDDASAIFSLFLLRAAGFLLPCYIM 197
++ CR D + + A+FSL +LR AG L P +M
Sbjct: 159 PIRTRSSTLCCRTVAIIFMSLLVLRHTLPLMIGGDGEYSLALFSLLVLRTAGILFPILVM 218
Query: 198 AWAIS 202
A++
Sbjct: 219 VRALA 223
>Os01g0894600 RINGv domain containing protein
Length = 219
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 101/173 (58%), Gaps = 7/173 (4%)
Query: 28 GMVECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTA 87
GM+ECRICQEE ++SPCAC+G+LK+AHR+C+QRWC++KG+I CEIC+ Y P Y
Sbjct: 38 GMIECRICQEEGDEGAMDSPCACTGTLKFAHRKCIQRWCDKKGNITCEICNQVYSPNYVL 97
Query: 88 PP-QVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAA 146
PP + E +++ W R+D HD LA+A A+ +LL+ E+D+ ++N++ A
Sbjct: 98 PPTKCCSAEMDMDLRQS-WV---GRIDPHDSHFLAIAIAEQQLLQAEFDDCVSSNSSGAT 153
Query: 147 FCRXXXXXXXXXXXXXXXXXXXXXDDE-DDASAIFSLFLLRAAGFLLPCYIMA 198
CR DA+ +FS L+ AGF LPCY++A
Sbjct: 154 CCRTVVLILMLLLLVRHVVVFVRDVSMLQDATVLFSA-TLQFAGFFLPCYVIA 205
>Os05g0552400 RINGv domain containing protein
Length = 252
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 90/184 (48%), Gaps = 15/184 (8%)
Query: 20 EEETGALIGMVECRICQEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHV 79
E++G L VECRICQEED +E+PC+C GSLKYAHR+C+QRWC+EKGD ICEIC
Sbjct: 46 REKSGVL---VECRICQEEDDQTYMETPCSCRGSLKYAHRKCIQRWCDEKGDTICEICLQ 102
Query: 80 SYKPGYTAPPQV-HHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYT 138
Y P YTAP ++ H +I + + I + D A + L
Sbjct: 103 QYTPNYTAPAKLFQHGRNSIFFRTPGY-IQAQVMQNTDRSAAASTSYDPEL--------- 152
Query: 139 ATNNNAAAFCRXXXXXXXXXXXXXXXXXXXXXDDEDDASAIFSLFLLRAAGFLLPCYIMA 198
N +CR D + A+ +L +LR AG ++P YI+
Sbjct: 153 -PNPKGVIYCRIVALTLMVLLLLHDAISVFLGDHDAYTVAMITLLMLRTAGIVIPVYIIL 211
Query: 199 WAIS 202
+++
Sbjct: 212 LSLT 215
>Os01g0303600 RINGv domain containing protein
Length = 220
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 89/183 (48%), Gaps = 18/183 (9%)
Query: 28 GMVECRIC--QEEDLAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGY 85
M +CRIC +EE+ +ESPC CSGSLKYAHR CVQRWC+EKG +CEIC +++PGY
Sbjct: 11 AMRQCRICHEEEEEGCTAMESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFEPGY 70
Query: 86 TAPP---QVHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNN 142
TAPP Q H TI R L PR + E +Y E
Sbjct: 71 TAPPKKAQPAHVAVTI------------RESLEVPRPSYEPEDTPLIGEQDYAECAGAAG 118
Query: 143 NAAAFCRXXXXXXXXXXXXXXXXXXXXXDDEDD-ASAIFSLFLLRAAGFLLPCYIMAWAI 201
+A +CR A ++ +++LLRA+G LLP Y++ I
Sbjct: 119 RSATWCRSVAVTFTAVLLLRHLVAVVTVGAAHQYAFSLLTIYLLRASGILLPFYVVMRLI 178
Query: 202 SIM 204
S +
Sbjct: 179 STV 181
>Os05g0355300 Zinc finger, RING-type domain containing protein
Length = 213
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 81/166 (48%), Gaps = 13/166 (7%)
Query: 34 ICQEED--LAKNLESPCACSGSLKYAHRECVQRWCNEKGDIICEICHVSYKPGYTAPP-Q 90
IC EE+ +ESPC CSGSLKYAHR CVQRWC+EKG +CEIC +++ YT PP +
Sbjct: 8 ICHEEEDEWCAAIESPCGCSGSLKYAHRGCVQRWCDEKGSTLCEICLQNFESDYTIPPKK 67
Query: 91 VHHDETTIEISSGDWSISGNRLDLHDPRILAMAAAQHRLLEDEYDEYTATNNNAAAFCRX 150
V ET + + + D +L +Q + E N + +++CR
Sbjct: 68 VQVVETAVTVRA---------FFCRDEEMLPEELSQEDQEQYAGSEAQTGNGDCSSWCRS 118
Query: 151 XXXXXXXXXXXXXXXXXXXXDDEDD-ASAIFSLFLLRAAGFLLPCY 195
+ D A ++ ++FLLRAAG LLP Y
Sbjct: 119 LTITFTIMLLVWHLIAVVTIEAADHCAFSLVTIFLLRAAGILLPFY 164
>Os09g0413000 Hypothetical protein
Length = 79
Score = 85.9 bits (211), Expect = 2e-17, Method: Composition-based stats.
Identities = 45/76 (59%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 173 EDDASAIFSLFLLRAAGFLLPCYIMAWAISIMXXXXXXXEEAMLLPTEVAIILHR-NGRT 231
+DD SA+FSLFLLRAAGFLLP YIMAWA+SI+ E A L TEVA IL G
Sbjct: 1 DDDTSAMFSLFLLRAAGFLLPFYIMAWAVSILQRRRQRQEAAALAATEVAFILQSGQGTG 60
Query: 232 MQFAVAPESPTTPHPE 247
+ F +AP+SPTTP E
Sbjct: 61 VHFTIAPDSPTTPQHE 76
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,789,743
Number of extensions: 346030
Number of successful extensions: 812
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 9
Length of query: 250
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 152
Effective length of database: 11,918,829
Effective search space: 1811662008
Effective search space used: 1811662008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)