BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0222100 Os02g0222100|AK110984
(112 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0222100 Similar to Cysteine synthase (EC 4.2.99.8) 224 7e-60
Os06g0564500 Cysteine synthase (EC 4.2.99.8) 165 6e-42
Os06g0564700 Similar to Cysteine synthase (EC 4.2.99.8) 152 4e-38
Os06g0149700 Cysteine synthase (EC 4.2.99.8) 150 1e-37
Os06g0149900 Similar to Cysteine synthase (EC 4.2.99.8) 127 2e-30
Os12g0625000 Cysteine synthase (EC 2.5.1.47) (O-acetylserin... 93 5e-20
Os03g0747800 Cysteine synthase (EC 2.5.1.47) (O-acetylserin... 92 8e-20
Os01g0978100 Similar to Cysteine synthase, mitochondrial pr... 91 2e-19
Os04g0165700 Cysteine synthase (EC 2.5.1.47) 89 6e-19
Os01g0814800 Similar to Cysteine synthase, chloroplast prec... 83 3e-17
>Os02g0222100 Similar to Cysteine synthase (EC 4.2.99.8)
Length = 112
Score = 224 bits (572), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 HRVEMQEGRKGVPSLLSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQ 60
HRVEMQEGRKGVPSLLSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQ
Sbjct: 1 HRVEMQEGRKGVPSLLSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQ 60
Query: 61 PLSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKGQM 112
PLSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKGQM
Sbjct: 61 PLSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKGQM 112
>Os06g0564500 Cysteine synthase (EC 4.2.99.8)
Length = 357
Score = 165 bits (418), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 94/107 (87%)
Query: 4 EMQEGRKGVPSLLSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLS 63
E ++GRKG+PSLLSS+ E IASNITQLIGWTPL+E+KNIAK +G+ ARLVGK+E YQPL
Sbjct: 21 EQEQGRKGIPSLLSSREENIASNITQLIGWTPLVEMKNIAKNEGVQARLVGKMEAYQPLC 80
Query: 64 SVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
SVKDRSALR+IEDAEE+GLI+PG+TTL TSGNLGIG+ VA QKG
Sbjct: 81 SVKDRSALRMIEDAEEKGLITPGVTTLIEPTSGNLGIGLVLVAVQKG 127
>Os06g0564700 Similar to Cysteine synthase (EC 4.2.99.8)
Length = 342
Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 90/109 (82%), Gaps = 2/109 (1%)
Query: 4 EMQEGRKGVPSLLSSQ--GECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQP 61
E++EGR G+PSLLSS E IASNI QLIGWTPLIE+KNI KK+GI RL+GK+E YQP
Sbjct: 4 EVEEGRTGIPSLLSSAVGEETIASNIAQLIGWTPLIEMKNIPKKEGIQTRLIGKMETYQP 63
Query: 62 LSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
L SVKDR+AL +IEDAEE+GLI+PG+TTL TSGNLGIG+ VA QKG
Sbjct: 64 LFSVKDRTALSMIEDAEEKGLITPGVTTLIEPTSGNLGIGLVLVAIQKG 112
>Os06g0149700 Cysteine synthase (EC 4.2.99.8)
Length = 339
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/109 (70%), Positives = 91/109 (83%), Gaps = 3/109 (2%)
Query: 5 MQEG-RKGVPSLL--SSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQP 61
M+EG R+G+PSLL SS E IA++ITQL+GWTPLIEL I +KDG+ AR+VGK+E YQP
Sbjct: 1 MEEGGRRGIPSLLNSSSSDEHIATDITQLVGWTPLIELNRIVRKDGVNARIVGKLESYQP 60
Query: 62 LSSVKDRSALRLIEDAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
L SVKDRSALR+IEDAEE+GLISPG+TTL TSGNLGIGVA+ A KG
Sbjct: 61 LCSVKDRSALRMIEDAEEKGLISPGVTTLVEPTSGNLGIGVAYNALLKG 109
>Os06g0149900 Similar to Cysteine synthase (EC 4.2.99.8)
Length = 347
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/100 (68%), Positives = 77/100 (77%), Gaps = 9/100 (9%)
Query: 21 ECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEER 80
E IAS+ITQLIGWTPL+ELK IA KDGI AR+VGK+E YQPL SVKDRSALR+IEDAEE+
Sbjct: 28 EHIASDITQLIGWTPLVELKRIASKDGIDARIVGKVEAYQPLCSVKDRSALRMIEDAEEK 87
Query: 81 GLISPGITTLAGVTSGNLGI---------GVAFVAAQKGQ 111
GLI+PG+TTL TSGNLG+ G FVA GQ
Sbjct: 88 GLITPGVTTLVEPTSGNLGLGLVLVALRKGYRFVAVMPGQ 127
>Os12g0625000 Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-
acetylserine (Thiol)-lyase) (CSase) (OAS-TL)
Length = 321
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/91 (52%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 20 GECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEE 79
GE IA ++T+LIG TPL+ L + DG R+ K+E +P SSVKDR +I DAEE
Sbjct: 2 GETIAKDVTELIGNTPLVYLNRVT--DGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEE 59
Query: 80 RGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
+GLI+PG + L TSGN GIG+AF+AA KG
Sbjct: 60 KGLITPGKSVLIEPTSGNTGIGLAFMAAAKG 90
>Os03g0747800 Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-
acetylserine (Thiol)-lyase) (CSase) (OAS-TL)
Length = 325
Score = 92.0 bits (227), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 16 LSSQGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIE 75
++ G+ IAS++T LIG TPL+ L + DG A++ K+E +P SSVKDR +I
Sbjct: 1 MAESGQSIASDVTALIGNTPLVYLNKVV--DGCEAQIAAKLEIMEPCSSVKDRIGYSMIT 58
Query: 76 DAEERGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
DAEE+GLI+PG + L TSGN GIG+AF+AA KG
Sbjct: 59 DAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKG 93
>Os01g0978100 Similar to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47)
(O- acetylserine sulfhydrylase) (O-acetylserine
(Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C)
Length = 394
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 19 QGECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAE 78
+G IA ++TQLIG TP++ L NI K G A + K+E +P SVKDR +I DAE
Sbjct: 73 EGLNIADDVTQLIGKTPMVYLNNIVK--GCVANVAAKLEIMEPCCSVKDRIGYSMISDAE 130
Query: 79 ERGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
E+GLI+PG + L TSGN GIG+AF+AA +G
Sbjct: 131 EKGLITPGKSVLVEPTSGNTGIGLAFIAASRG 162
>Os04g0165700 Cysteine synthase (EC 2.5.1.47)
Length = 377
Score = 89.4 bits (220), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 64/91 (70%), Gaps = 2/91 (2%)
Query: 20 GECIASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEE 79
G I + +QLIG TP++ L + +G AR+ K+E QP SVKDR A+ ++EDAE+
Sbjct: 55 GLKIRDSASQLIGRTPMVYLNKVT--EGCGARIAAKLEFLQPSFSVKDRPAISMLEDAEK 112
Query: 80 RGLISPGITTLAGVTSGNLGIGVAFVAAQKG 110
+GLI+PG TTL TSGN+GIG+AF+AA KG
Sbjct: 113 KGLITPGKTTLIEPTSGNMGIGLAFMAALKG 143
>Os01g0814800 Similar to Cysteine synthase, chloroplast precursor (EC 2.5.1.47)
(O-acetylserine sulfhydrylase) (O-acetylserine
(Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B)
Length = 392
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/88 (51%), Positives = 57/88 (64%), Gaps = 2/88 (2%)
Query: 23 IASNITQLIGWTPLIELKNIAKKDGIAARLVGKIEPYQPLSSVKDRSALRLIEDAEERGL 82
IA ++TQLIG TP++ L N+ DG A + K+E P SVKDR L +I DAEE+GL
Sbjct: 86 IAQDVTQLIGKTPMVYLNNVV--DGCVANIAAKLEYMGPCRSVKDRIGLSMINDAEEKGL 143
Query: 83 ISPGITTLAGVTSGNLGIGVAFVAAQKG 110
I P T L T+GN GIG+A VAA +G
Sbjct: 144 IFPNKTILVEPTTGNTGIGLASVAAARG 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,314,236
Number of extensions: 112174
Number of successful extensions: 224
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 10
Length of query: 112
Length of database: 17,035,801
Length adjustment: 79
Effective length of query: 33
Effective length of database: 12,910,895
Effective search space: 426059535
Effective search space used: 426059535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)