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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0149700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cysteine synthase (EC 4.2.99.8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0211) R2 : 0.000607
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0233 (0.0443) R2dN8 : 0.000784 R2N8 : 0.000607
σ : 0.397
deviance : 72.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.74 0.378 3.35 0.262 0.236 0.26 -0.16 1.41 -0.046 6.86 94.53 5900 -- --
67.62 0.383 3.35 0.156 0.235 0.3 -0.191 -- -0.0777 6.73 118.9 5838 -- --
64.78 0.375 3.35 0.248 0.238 0.268 -- 1.41 -0.0469 6.98 91.61 5913 -- --
67.63 0.383 3.35 0.151 0.238 0.314 -- -- -0.0811 7.32 173.4 5512 -- --
67.66 0.383 3.36 0.252 -- 0.273 -- 1.4 -0.0423 -- 91 5834 -- --
68.8 0.389 3.33 0.132 0.234 -- -0.19 -- -0.0136 6.76 -- -- -- --
68.89 0.389 3.33 0.129 0.234 -- -- -- -0.0128 6.95 -- -- -- --
70.44 0.391 3.35 0.156 -- 0.309 -- -- -0.0749 -- 92 5710 -- --
68.23 0.385 3.35 -- 0.239 0.29 -- -- -0.0908 7.24 170.7 5509 -- --
71.75 0.396 3.34 0.134 -- -- -- -- -0.00849 -- -- -- -- --
69.33 0.389 3.34 -- 0.235 -- -- -- -0.0272 6.92 -- -- -- --
71.07 0.393 3.35 -- -- 0.286 -- -- -0.0806 -- 88.99 5716 -- --
72.23 0.397 3.34 -- -- -- -- -- -0.0233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 51.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
2 51.50 wind 1.0 30 < th dose independent rect. 2 1
3 51.55 wind 3.0 30 < th dose dependent rect. 2 1
8 51.59 temperature 25.0 30 < th dose independent rect. 2 1
13 51.62 temperature 10.0 30 > th dose independent rect. 2 1
16 51.62 humidity 50.0 30 > th dose independent rect. 2 1
19 51.62 atmosphere 995.0 30 > th dose independent rect. 2 1
20 51.62 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 51.62 radiation 1.0 30 < th dose independent rect. 2 1
27 51.62 precipitation 0.1 30 < th dose independent rect. 2 1
28 51.62 temperature 10.0 30 > th dose independent rect. 3 23
29 51.62 radiation 1.0 30 < th dose dependent rect. 2 1
34 51.62 precipitation 0.1 30 < th dose dependent rect. 2 1
35 51.63 temperature 10.0 30 > th dose dependent rect. 2 1
37 51.64 humidity 50.0 30 > th dose dependent rect. 2 1
39 51.65 atmosphere 1005.0 30 > th dose dependent rect. 2 1
45 51.70 temperature 30.0 30 < th dose dependent rect. 2 1
51 51.80 atmosphere 995.0 30 > th dose dependent rect. 2 1
57 51.91 atmosphere 1005.0 30 > th dose independent rect. 2 1
62 51.95 wind 9.0 30 < th dose independent rect. 3 23
93 52.18 wind 1.0 30 > th dose independent rect. 2 1
107 53.88 atmosphere 995.0 30 > th dose independent rect. 3 23
115 55.73 precipitation 0.1 30 < th dose independent rect. 3 23
116 55.73 precipitation 0.1 30 < th dose dependent rect. 3 23
128 57.09 radiation 1.0 43200 < th dose dependent rect. 3 1
138 57.77 wind 9.0 1440 < th dose independent rect. 3 1
139 57.77 temperature 10.0 1440 > th dose independent rect. 3 1
142 57.77 temperature 30.0 1440 < th dose independent rect. 3 1
146 57.77 humidity 50.0 1440 > th dose independent rect. 3 1
155 57.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
156 57.77 radiation 1.0 1440 < th dose independent rect. 3 1
176 57.77 temperature 10.0 1440 > th dose independent rect. 4 23
179 57.77 radiation 1.0 1440 < th dose dependent rect. 3 1
198 58.13 humidity 50.0 30 > th dose independent rect. 3 23
222 59.44 humidity 90.0 90 < th dose independent rect. 2 1
265 60.43 atmosphere 1015.0 30 < th dose independent rect. 3 23
272 60.81 temperature 10.0 720 > th dose independent rect. 15 8
273 60.81 temperature 10.0 720 > th dose independent rect. 23 16
283 61.05 atmosphere 995.0 720 > th dose independent rect. 23 16
285 61.09 temperature 10.0 720 > th dose independent rect. 3 8
286 61.09 atmosphere 995.0 720 > th dose independent rect. 3 8
287 61.09 temperature 10.0 720 > th dose independent rect. 11 16
289 61.19 precipitation 0.1 720 < th dose independent rect. 15 8
291 61.19 precipitation 0.1 720 < th dose dependent rect. 15 8
293 61.28 wind 9.0 720 < th dose independent rect. 3 8
304 61.64 humidity 90.0 90 < th dose independent rect. 1 4
322 61.69 atmosphere 1015.0 720 < th dose independent rect. 3 8
338 61.87 wind 1.0 30 > th dose dependent rect. 2 1
342 61.91 humidity 50.0 720 > th dose independent rect. 3 8
343 61.91 radiation 40.0 720 < th dose independent rect. 15 8
345 61.97 wind 9.0 30 < th dose dependent rect. 3 23
351 62.09 temperature 10.0 30 > th dose dependent rect. 3 23
355 62.16 precipitation 0.1 720 < th dose independent rect. 11 16
357 62.16 precipitation 0.1 720 < th dose dependent rect. 11 16
369 62.31 wind 1.0 10 < th dose independent rect. 13 14
380 62.42 wind 1.0 10 < th dose independent rect. 17 10
382 62.43 atmosphere 1015.0 1440 < th dose independent rect. 3 1
385 62.46 wind 1.0 10 < th dose independent rect. 21 6
404 62.65 temperature 30.0 30 < th dose independent rect. 3 23
409 62.72 wind 1.0 10 < th dose independent rect. 6 21
412 62.78 wind 1.0 10 < th dose independent rect. 8 19
436 62.97 wind 9.0 720 < th dose independent rect. 15 8
450 63.13 humidity 90.0 10 > th dose independent rect. 24 3
495 63.34 humidity 80.0 14400 < th dose dependent rect. 3 6
509 63.43 atmosphere 995.0 30 > th dose dependent rect. 3 23
513 63.52 wind 9.0 720 < th dose independent rect. 23 16
517 63.57 radiation 10.0 30 < th dose dependent rect. 3 23
519 63.58 precipitation 0.1 720 < th dose independent rect. 3 8
520 63.58 precipitation 0.1 720 < th dose dependent rect. 3 8
527 63.67 humidity 50.0 30 > th dose dependent rect. 3 23
528 63.68 precipitation 0.1 720 < th dose independent rect. 23 16
529 63.68 precipitation 0.1 720 < th dose dependent rect. 23 16
543 63.76 radiation 10.0 30 < th dose independent rect. 3 23
611 63.99 radiation 40.0 30 < th dose independent rect. 3 23
614 64.02 humidity 80.0 720 > th dose dependent rect. 3 1
620 64.04 radiation 40.0 30 < th dose dependent rect. 3 23
655 64.10 humidity 70.0 14400 > th dose independent rect. 8 1
660 64.12 wind 3.0 30 < th dose dependent rect. 22 5
666 64.15 atmosphere 995.0 720 > th dose independent rect. 15 8
671 64.18 humidity 90.0 720 > th dose independent rect. 3 1
682 64.26 atmosphere 995.0 720 > th dose independent rect. 11 16
686 64.27 wind 1.0 720 > th dose independent rect. 15 8
691 64.29 wind 1.0 14400 < th dose dependent rect. 6 1
710 64.35 temperature 25.0 720 > th dose dependent rect. 3 5
714 64.38 humidity 70.0 14400 < th dose independent rect. 8 1
718 64.39 humidity 70.0 14400 > th dose independent rect. 4 5
719 64.39 humidity 70.0 14400 > th dose independent rect. 24 9
720 64.39 humidity 70.0 14400 > th dose independent rect. 22 11
734 64.42 humidity 50.0 720 > th dose independent rect. 23 16
756 64.49 wind 3.0 30 < th dose dependent rect. 13 14
760 64.51 wind 1.0 10 > th dose independent sin 16 NA
761 64.51 atmosphere 1000.0 10 > th dose independent rect. 16 10
762 64.51 atmosphere 1000.0 10 > th dose independent rect. 14 12
763 64.51 radiation 40.0 90 < th dose independent rect. 13 14
778 64.58 humidity 70.0 14400 < th dose independent rect. 6 4
804 64.59 temperature 25.0 30 > th dose dependent rect. 16 19
847 64.65 wind 3.0 30 < th dose dependent rect. 20 7
930 64.74 humidity 70.0 4320 > th dose dependent rect. 3 8
958 64.80 wind 3.0 30 < th dose dependent rect. 15 12
973 64.83 wind 5.0 14400 < th dose independent rect. 11 1
975 64.84 humidity 60.0 10 > th dose independent rect. 14 12
976 64.84 temperature 10.0 720 > th dose dependent rect. 3 1
997 64.90 temperature 25.0 720 > th dose independent rect. 3 6