Os04g0165700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cysteine synthase (EC 2.5.1.47).
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Os04g0165700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cysteine synthase (EC 2.5.1.47).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.86 | 0.605 | 10.8 | -0.261 | 0.904 | 0.754 | 1.24 | 2.08 | -0.623 | 9.03 | 1005 | 5346 | -- | -- |
| 166.43 | 0.601 | 10.8 | -0.429 | 0.902 | 0.982 | 1.42 | -- | -0.549 | 8.78 | 1003 | 10552 | -- | -- |
| 171.06 | 0.609 | 10.8 | -0.227 | 0.899 | 0.758 | -- | 2.08 | -0.624 | 9.24 | 1005 | 5327 | -- | -- |
| 170.83 | 0.609 | 10.8 | -0.37 | 0.899 | 0.995 | -- | -- | -0.563 | 9.22 | 1003 | 10556 | -- | -- |
| 217.66 | 0.687 | 10.8 | -0.214 | -- | 0.758 | -- | 1.86 | -0.61 | -- | 1005 | 5345 | -- | -- |
| 186.04 | 0.639 | 10.8 | -0.291 | 0.901 | -- | 1.16 | -- | -0.741 | 9.08 | -- | -- | -- | -- |
| 190.62 | 0.647 | 10.8 | -0.248 | 0.893 | -- | -- | -- | -0.739 | 9.28 | -- | -- | -- | -- |
| 217.09 | 0.686 | 10.8 | -0.375 | -- | 0.999 | -- | -- | -0.57 | -- | 1003 | 10385 | -- | -- |
| 174.4 | 0.615 | 10.8 | -- | 0.893 | 0.933 | -- | -- | -0.545 | 9.24 | 1003 | 10470 | -- | -- |
| 237.09 | 0.719 | 10.8 | -0.252 | -- | -- | -- | -- | -0.735 | -- | -- | -- | -- | -- |
| 192.24 | 0.649 | 10.8 | -- | 0.894 | -- | -- | -- | -0.711 | 9.3 | -- | -- | -- | -- |
| 220.73 | 0.692 | 10.8 | -- | -- | 0.937 | -- | -- | -0.54 | -- | 1003 | 10368 | -- | -- |
| 238.76 | 0.721 | 10.8 | -- | -- | -- | -- | -- | -0.707 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.44 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 2 | 161.57 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 8 | 162.48 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 12 | 162.53 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 19 | 162.74 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 35 | 162.97 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 39 | 163.07 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 64 | 163.52 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 111 | 164.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 151 | 164.67 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 13 |
| 157 | 164.73 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 179 | 164.85 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 11 |
| 186 | 164.91 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 287 | 165.36 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 6 | 6 |
| 311 | 165.49 | atmosphere | 1005.0 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 344 | 165.64 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 346 | 165.64 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 410 | 165.85 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 417 | 165.87 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 436 | 165.93 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 508 | 166.12 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 532 | 166.16 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 610 | 166.31 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 713 | 166.40 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 716 | 166.41 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 760 | 166.44 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 9 |
| 826 | 166.48 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 835 | 166.49 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 858 | 166.51 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 870 | 166.53 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 918 | 166.56 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 960 | 166.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 18 | 22 |