Os06g0564500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cysteine synthase (EC 4.2.99.8).
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Os06g0564500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cysteine synthase (EC 4.2.99.8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.01 | 0.315 | 12.7 | -2.22 | 0.38 | 1.01 | -0.656 | -1.8 | -0.401 | 16.9 | 23.7 | 1151 | -- | -- |
| 46.45 | 0.317 | 12.6 | -1.76 | 0.367 | 0.857 | -0.669 | -- | -0.292 | 16.9 | 23 | 1081 | -- | -- |
| 46.06 | 0.316 | 12.7 | -2.19 | 0.387 | 0.982 | -- | -1.67 | -0.394 | 17.2 | 23.75 | 1176 | -- | -- |
| 47.33 | 0.32 | 12.6 | -1.76 | 0.364 | 0.844 | -- | -- | -0.295 | 17.1 | 23 | 1114 | -- | -- |
| 49.06 | 0.326 | 12.7 | -2.09 | -- | 1.07 | -- | -1.6 | -0.406 | -- | 21.66 | 665 | -- | -- |
| 68.39 | 0.388 | 12.6 | -1.5 | 0.354 | -- | -0.456 | -- | -0.138 | 18.6 | -- | -- | -- | -- |
| 68.81 | 0.388 | 12.6 | -1.5 | 0.354 | -- | -- | -- | -0.14 | 19 | -- | -- | -- | -- |
| 50.46 | 0.331 | 12.6 | -1.75 | -- | 0.953 | -- | -- | -0.307 | -- | 21.73 | 716 | -- | -- |
| 121.33 | 0.513 | 12.5 | -- | 0.353 | 0.497 | -- | -- | 0.0525 | 17.2 | 27.6 | 1056 | -- | -- |
| 75.39 | 0.406 | 12.6 | -1.5 | -- | -- | -- | -- | -0.146 | -- | -- | -- | -- | -- |
| 127.91 | 0.529 | 12.6 | -- | 0.371 | -- | -- | -- | 0.0268 | 18.8 | -- | -- | -- | -- |
| 125.25 | 0.521 | 12.5 | -- | -- | 0.591 | -- | -- | 0.0318 | -- | 26.7 | 779 | -- | -- |
| 135.1 | 0.543 | 12.5 | -- | -- | -- | -- | -- | 0.0205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.10 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 42.42 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 9 | 42.63 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 10 | 42.63 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 30 | 42.94 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 34 | 42.99 | radiation | 10.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 45 | 43.09 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 82 | 43.28 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 98 | 43.33 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 104 | 43.38 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 107 | 43.38 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 109 | 43.40 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 114 | 43.44 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 123 | 43.49 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 152 | 43.59 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 153 | 43.60 | humidity | 90.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 181 | 43.68 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 186 | 43.69 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 190 | 43.70 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 209 | 43.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 214 | 43.74 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 228 | 43.76 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 231 | 43.76 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 238 | 43.77 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 255 | 43.79 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 293 | 43.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 299 | 43.82 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 301 | 43.83 | humidity | 90.0 | 43200 | < th | dose independent | no | NA | NA |
| 310 | 43.83 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 359 | 43.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 362 | 43.90 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 365 | 43.90 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 392 | 43.93 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 396 | 43.94 | radiation | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 411 | 43.95 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 412 | 43.95 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 17 |
| 413 | 43.95 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 20 |
| 414 | 43.96 | humidity | 90.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 425 | 43.97 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 17 |
| 431 | 43.98 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 452 | 43.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 7 |
| 471 | 44.00 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 22 |
| 473 | 44.00 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 492 | 44.01 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 551 | 44.04 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 569 | 44.05 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 597 | 44.07 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 606 | 44.07 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 607 | 44.07 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 18 | NA |
| 614 | 44.08 | humidity | 90.0 | 43200 | > th | dose independent | no | NA | NA |
| 656 | 44.10 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 667 | 44.11 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 668 | 44.11 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 701 | 44.13 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 22 | 8 |
| 722 | 44.14 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 18 |
| 750 | 44.16 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 776 | 44.18 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 9 |
| 943 | 44.27 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 948 | 44.27 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 15 | NA |
| 981 | 44.29 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 6 |