Os02g0222100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine synthase (EC 4.2.99.8).
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Os02g0222100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine synthase (EC 4.2.99.8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.14 | 0.484 | 10.2 | -3.05 | 1.64 | -1.08 | 1.41 | 4.2 | -0.793 | 3.16 | 28.91 | 1459 | -- | -- |
| 110.08 | 0.492 | 10.1 | -2.11 | 1.89 | -1.66 | 1.16 | -- | -0.528 | 2.86 | 23.3 | 1594 | -- | -- |
| 111.18 | 0.491 | 10.2 | -3.1 | 1.7 | -1.06 | -- | 4.19 | -0.808 | 3.19 | 28.8 | 1690 | -- | -- |
| 114.71 | 0.502 | 10.1 | -2.14 | 1.89 | -1.67 | -- | -- | -0.536 | 2.85 | 23.28 | 1613 | -- | -- |
| 258.52 | 0.749 | 10.2 | -3.21 | -- | -1.35 | -- | 3.81 | -0.791 | -- | 35 | 2548 | -- | -- |
| 145.49 | 0.565 | 10 | -1.77 | 1.67 | -- | 1.24 | -- | -0.297 | 3.15 | -- | -- | -- | -- |
| 150.52 | 0.575 | 10 | -1.79 | 1.67 | -- | -- | -- | -0.304 | 3.15 | -- | -- | -- | -- |
| 268.08 | 0.763 | 10.1 | -2.32 | -- | -1.5 | -- | -- | -0.637 | -- | 25.6 | 2518 | -- | -- |
| 225.44 | 0.703 | 10 | -- | 1.74 | -0.87 | -- | -- | -0.194 | 2.99 | 22.8 | 41 | -- | -- |
| 310.07 | 0.823 | 10 | -1.72 | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
| 235.26 | 0.717 | 9.98 | -- | 1.64 | -- | -- | -- | -0.105 | 3.15 | -- | -- | -- | -- |
| 369.66 | 0.898 | 9.94 | -- | -- | 0.934 | -- | -- | 0.103 | -- | 27.7 | 1069 | -- | -- |
| 388.27 | 0.92 | 9.98 | -- | -- | -- | -- | -- | -0.0694 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 102.30 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 102.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 4 | 102.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 5 | 102.80 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 6 | 102.82 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 11 | 103.00 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 31 | 103.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 13 |
| 54 | 103.35 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 16 |
| 56 | 103.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 63 | 103.38 | wind | 7 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 70 | 103.41 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 1 | NA |
| 74 | 103.42 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 94 | 103.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 104 | 103.52 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 17 |
| 134 | 103.60 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 1 | NA |
| 172 | 103.71 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 203 | 103.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 7 |
| 221 | 103.89 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 242 | 103.97 | wind | 1 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 355 | 104.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 12 |
| 366 | 104.32 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 6 | 22 |
| 375 | 104.34 | atmosphere | 1005 | 43200 | > th | dose independent | no | NA | NA |
| 392 | 104.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 393 | 104.36 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 411 | 104.40 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 442 | 104.46 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 447 | 104.47 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 474 | 104.50 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 6 | 22 |
| 478 | 104.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 502 | 104.54 | temperature | 15 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 505 | 104.55 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
| 518 | 104.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 545 | 104.60 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 556 | 104.61 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 557 | 104.61 | temperature | 30 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 564 | 104.62 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 590 | 104.66 | wind | 7 | 43200 | < th | dose dependent | rect. | 13 | 8 |
| 594 | 104.67 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 5 |
| 636 | 104.73 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 659 | 104.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 667 | 104.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 722 | 104.86 | temperature | 15 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 730 | 104.88 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 733 | 104.88 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 741 | 104.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 761 | 104.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 785 | 104.93 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 795 | 104.94 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 871 | 105.04 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 873 | 105.04 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 900 | 105.08 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 903 | 105.08 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 907 | 105.08 | atmosphere | 1000 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 924 | 105.10 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 946 | 105.13 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 1 |