Os06g0564700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cysteine synthase (EC 4.2.99.8).
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Os06g0564700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cysteine synthase (EC 4.2.99.8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 521.07 | 1.07 | 5.11 | -2.54 | 1.23 | -3.76 | -2 | 0.192 | -1.12 | 22.4 | 29.5 | 291 | -- | -- |
| 521.09 | 1.06 | 5.11 | -2.51 | 1.21 | -3.76 | -1.99 | -- | -1.11 | 22.3 | 29.44 | 298 | -- | -- |
| 536.55 | 1.08 | 5.1 | -2.4 | 1.22 | -3.66 | -- | -0.0445 | -1.09 | 22 | 29.2 | 303 | -- | -- |
| 536.48 | 1.08 | 5.1 | -2.41 | 1.18 | -3.67 | -- | -- | -1.1 | 21.9 | 29.11 | 317 | -- | -- |
| 585.87 | 1.13 | 5.12 | -2.74 | -- | -4.29 | -- | 0.753 | -1.25 | -- | 29.81 | 502 | -- | -- |
| 711.62 | 1.25 | 4.95 | -1.51 | 1.78 | -- | -1.12 | -- | -0.333 | 19.7 | -- | -- | -- | -- |
| 714.89 | 1.25 | 4.95 | -1.48 | 1.79 | -- | -- | -- | -0.333 | 19.6 | -- | -- | -- | -- |
| 587.02 | 1.13 | 5.1 | -2.55 | -- | -4.21 | -- | -- | -1.21 | -- | 29.77 | 501 | -- | -- |
| 672.78 | 1.21 | 5 | -- | 1.35 | -2.66 | -- | -- | -0.622 | 21.3 | 29.7 | 257 | -- | -- |
| 887.12 | 1.39 | 4.9 | -1.51 | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
| 772.7 | 1.3 | 4.91 | -- | 1.8 | -- | -- | -- | -0.168 | 19.5 | -- | -- | -- | -- |
| 743.63 | 1.27 | 4.99 | -- | -- | -3.32 | -- | -- | -0.734 | -- | 30.2 | 481 | -- | -- |
| 947.02 | 1.44 | 4.87 | -- | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 514.34 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 2 | 514.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 3 | 514.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 8 | 515.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 15 |
| 10 | 515.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 29 | 518.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 33 | 519.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 43 | 520.90 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 48 | 521.36 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 14 |
| 53 | 521.65 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 74 | 522.94 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 76 | 523.02 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 86 | 523.38 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 107 | 524.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 131 | 524.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 181 | 525.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 187 | 526.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 10 | NA |
| 201 | 526.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 224 | 527.05 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 16 |
| 226 | 527.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 240 | 527.34 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 274 | 527.99 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 289 | 528.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 303 | 528.69 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 312 | 528.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 368 | 530.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 385 | 530.53 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 2 |
| 395 | 530.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 421 | 531.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 3 |
| 433 | 531.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 474 | 532.16 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 496 | 532.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 6 |
| 532 | 533.22 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 546 | 533.47 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 10 |
| 562 | 533.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 598 | 534.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 603 | 534.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 10 |
| 604 | 534.30 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 11 |
| 671 | 535.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 684 | 535.13 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 2 |
| 730 | 535.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 758 | 535.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 760 | 535.87 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 764 | 535.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 787 | 536.14 | temperature | 25 | 4320 | > th | dose independent | sin | 0 | NA |
| 807 | 536.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 820 | 536.37 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 21 |
| 823 | 536.39 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 862 | 536.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 894 | 536.88 | temperature | 25 | 4320 | < th | dose independent | sin | 23 | NA |