BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0133800 Os02g0133800|AK109376
(270 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) ... 492 e-139
Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) ... 151 4e-37
Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) ... 130 9e-31
Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 129 2e-30
Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) ... 129 3e-30
Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) ... 127 6e-30
Os06g0177100 127 8e-30
Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) ... 127 8e-30
Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment) 127 8e-30
Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC... 125 3e-29
Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) ... 120 2e-27
Os07g0614100 Alpha 1-2 subunit of 20S proteasome 91 9e-19
Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC... 77 2e-14
>Os02g0133800 Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S proteasome alpha
subunit F) (20S proteasome subunit alpha-6) (Proteasome
component C2)
Length = 270
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 249/270 (92%), Positives = 249/270 (92%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQ 60
MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQ
Sbjct: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQ 60
Query: 61 RKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCT 120
RKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCT
Sbjct: 61 RKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCT 120
Query: 121 QRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
QRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN
Sbjct: 121 QRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
Query: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDXX 240
DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIID
Sbjct: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSM 240
Query: 241 XXXXXXXXXXXXXXXXXXXDKGTDAAPMDI 270
DKGTDAAPMDI
Sbjct: 241 EAAEEAPAAEAESSSMQEEDKGTDAAPMDI 270
>Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha
subunit E) (20S proteasome subunit alpha-5)
Length = 237
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 127/223 (56%), Gaps = 16/223 (7%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SS 58
+ R +YD V T+SP GRLFQVEYA+EA+K GS +GL+++ VLA + S L S
Sbjct: 3 LTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPS 62
Query: 59 HQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSR-------LALR 111
K+ + +H G A++GL AD R L R E NH F Y P+ V LALR
Sbjct: 63 SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALR 122
Query: 112 LADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTF 171
+ + S RP+GV LL+AG DE+G LYY PSG +++ A AIGS S+ A +
Sbjct: 123 FGEG----DEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSS 178
Query: 172 LERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
L+ ++ + T ++ ALS +K+ ++ EK+T +N +A V
Sbjct: 179 LQEQYN--KELTLQEAETIALSILKQVME-EKVTPNNVDIAKV 218
>Os03g0180400 Proteasome subunit alpha type 6 (EC 3.4.25.1) (20S proteasome alpha
subunit A) (20S proteasome subunit alpha-1)
Length = 246
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQ-GSACVGLRSRTHAVLAAANKAASELSSHQR--K 62
YD +T +SP GRL+QVEYA +AVK G +G+R + + K +L H
Sbjct: 9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTH 68
Query: 63 VFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQR 122
+F + + G+ GLTAD R L R+E F + +PV LA +ADKAQV TQ
Sbjct: 69 LFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQH 128
Query: 123 SWKRPYGVGLLVAGLDESGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTFLERRFEGYND 181
++ RP GV +V G DE + C P+G++F ++A + G + Q A FLE++ +
Sbjct: 129 AYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQ 188
Query: 182 YTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDD 219
++ E+ ++ A+SA++ LQ E ++ V +V RKDD
Sbjct: 189 FSYEETVQIAISALQSVLQ-EDFKATEIEVGVV-RKDD 224
>Os03g0387100 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 121/216 (56%), Gaps = 5/216 (2%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SS 58
M +QY +TT+SP+G+L Q+E+A+ AV G +G+++ V+A K S L +
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
Query: 59 HQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQV 118
+K+ + + GV +G+ D RVL R R + + +Y +PV++L A Q
Sbjct: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
Query: 119 CTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEG 178
TQ RP+GV LL+AG D++G LY PSG+YF ++A A+G AKTFLE+R+
Sbjct: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYT- 179
Query: 179 YNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
D + I A+ +KE +G+ ++++N + I+
Sbjct: 180 -EDMELDDAIHTAILTLKEGYEGQ-ISANNIEIGII 213
>Os02g0634900 Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha
subunit B) (20S proteasome subunit alpha-2)
Length = 235
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 121/216 (56%), Gaps = 5/216 (2%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SS 58
M +QY +TT+SP+G+L Q+E+A+ AV G +G+++ V+A K S L +
Sbjct: 1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDET 60
Query: 59 HQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQV 118
+K+ + + GV +G+ D RVL R R + + +Y +PV++L A Q
Sbjct: 61 SVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQE 120
Query: 119 CTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEG 178
TQ RP+GV LL+AG D++G LY PSG+YF ++A A+G AKTFLE+R+
Sbjct: 121 FTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYT- 179
Query: 179 YNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
D + I A+ +KE +G+ ++++N + ++
Sbjct: 180 -EDMELDDAIHTAILTLKEGYEGQ-ISANNIEIGVI 213
>Os01g0811100 Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha
subunit G) (20S proteasome subunit alpha-7)
Length = 249
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 2/171 (1%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASE--LSSHQRKV 63
YD VTT+SP GR+FQVEYA +AV VG++ + VL S+ L R++
Sbjct: 8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRI 67
Query: 64 FRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRS 123
V H+G+A+AGL ADGR + +SE ++ VY P+ V LA R+A +CT
Sbjct: 68 HSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYW 127
Query: 124 WKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLER 174
W RP+G G+++ G D G LY PSG ++Y A+G QAAKT +E+
Sbjct: 128 WLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEK 178
>Os06g0177100
Length = 250
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 6/214 (2%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQR--- 61
+YD+ T +SP GRL+QVEYAMEA+ + +G+ + VL K S+L R
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 62 KVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQ 121
K++++ H A+AG+ +D +L R +A Y P+PV +L L D Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 122 RSWKRPYGVGLLVAGLDE-SGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
RP+GV L AG D+ G LY + PSGNY ++A A+G+ SQAA++ L++ + +
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYR--D 181
Query: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
T E+ + AL + +T+ LT+ +A V
Sbjct: 182 GMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215
>Os06g0176000 Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S proteasome alpha
subunit C) (20S proteasome subunit alpha-3)
Length = 250
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 6/214 (2%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQR--- 61
+YD+ T +SP GRL+QVEYAMEA+ + +G+ + VL K S+L R
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 62 KVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQ 121
K++++ H A+AG+ +D +L R +A Y P+PV +L L D Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 122 RSWKRPYGVGLLVAGLDE-SGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
RP+GV L AG D+ G LY + PSGNY ++A A+G+ SQAA++ L++ + +
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYR--D 181
Query: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
T E+ + AL + +T+ LT+ +A V
Sbjct: 182 GMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215
>Os06g0167600 Similar to Proteasome subunit alpha-3 (Fragment)
Length = 250
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 116/214 (54%), Gaps = 6/214 (2%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASELSSHQR--- 61
+YD+ T +SP GRL+QVEYAMEA+ + +G+ + VL K S+L R
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAE 63
Query: 62 KVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQ 121
K++++ H A+AG+ +D +L R +A Y P+PV +L L D Q TQ
Sbjct: 64 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQ 123
Query: 122 RSWKRPYGVGLLVAGLDE-SGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
RP+GV L AG D+ G LY + PSGNY ++A A+G+ SQAA++ L++ + +
Sbjct: 124 FGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYR--D 181
Query: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214
T E+ + AL + +T+ LT+ +A V
Sbjct: 182 GLTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215
>Os08g0548900 Similar to Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S
proteasome alpha subunit D) (20S proteasome subunit
alpha-4)
Length = 249
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SSHQRK 62
+YD +T +SP G LFQVEYA+EAV++G+A VG+R VL K+ +L S RK
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRK 62
Query: 63 VFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQR 122
+ + H +A AGL AD RVL R EC +H + P+ V + +A Q TQ
Sbjct: 63 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQS 122
Query: 123 SWKRPYGVGLLVAGLD--ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
RP+G+ L+ G D LY PSG + ++A A G S + + FLE+ Y
Sbjct: 123 GGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK---NYK 179
Query: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKD 218
D + ++ IK A+ A+ E ++ N +A++ KD
Sbjct: 180 DTSGKETIKLAIRALLEVVES---GGKNIEIAVMTHKD 214
>Os09g0538200 Proteasome subunit alpha type 7 (EC 3.4.25.1) (20S proteasome alpha
subunit D) (20S proteasome subunit alpha-4)
Length = 249
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 10/218 (4%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SSHQRK 62
+YD +T +SP G LFQVEYA+EAV++G+A VG+R VL K+ +L S RK
Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRK 62
Query: 63 VFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQR 122
+ + H +A AGL AD RVL R EC +H + + V + +A Q TQ
Sbjct: 63 IASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKYTQS 122
Query: 123 SWKRPYGVGLLVAGLD--ESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
RP+G+ L+ G D LY PSG + ++A A G S + + FLE+ Y
Sbjct: 123 GGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEK---NYK 179
Query: 181 DYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKD 218
+ + ++ IK A+ A+ E ++ N +A++ +KD
Sbjct: 180 ETSGKETIKLAIRALLEVVES---GGKNIEIAVMTQKD 214
>Os07g0614100 Alpha 1-2 subunit of 20S proteasome
Length = 253
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 6/202 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVK-QGSACVGLRSRTHAVLAAANKAASEL--SSHQRK 62
Y+ +T +SP GRL Q++YA AVK G VG+R +V ++ +L +
Sbjct: 23 YERFITLFSPEGRLCQLDYAFNAVKLAGITSVGVRG-DDSVYVLTHRKEDKLHDPTTITN 81
Query: 63 VFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQR 122
+F + D G+ G+ DGR +++ R+ F + + LA +AD+AQ+ TQ
Sbjct: 82 LFAITDRIGLLATGMPGDGRAIAQEARNAAAEFRFKWGYKMSPCMLAQWIADRAQIRTQH 141
Query: 123 SWKRPYGVGLLVAGLD-ESGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTFLERRFEGYN 180
+ RPYGV ++ G+D E G + C P+G +F ++A + G + + FLE R +
Sbjct: 142 AQIRPYGVVSMIFGIDEEKGTPELFTCDPAGQFFAHKATSAGPKEKEVMNFLEERMKSKP 201
Query: 181 DYTPEQLIKDALSAIKETLQGE 202
+ A SA+K L+G+
Sbjct: 202 SLSSGTTKGLAKSALKHVLEGD 223
>Os07g0468800 Similar to Proteasome subunit alpha type 4 (EC 3.4.25.1) (20S
proteasome alpha subunit C) (20S proteasome subunit
alpha-3)
Length = 207
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQR 61
+YD+ +T +SP GRL+QV+YAMEA+ + + + + VL K S+L S
Sbjct: 55 RYDSRMTIFSPEGRLYQVQYAMEAIGNAGSALCVLAADGVVLVGEKKVTSKLLQTSCSAE 114
Query: 62 KVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQ 121
K++++ H A+AG+ +D +L R + Y P+PV +L L Q TQ
Sbjct: 115 KMYKIDSHLACAVAGIMSDANILLNTARLHAQRYILSYQEPIPVEQLIQSLCHTKQGYTQ 174
Query: 122 RSWKRPYGVGLL 133
RP+GV L
Sbjct: 175 FGGLRPFGVSFL 186
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,958,427
Number of extensions: 294071
Number of successful extensions: 718
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 13
Length of query: 270
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 171
Effective length of database: 11,866,615
Effective search space: 2029191165
Effective search space used: 2029191165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)