BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0971500 Os01g0971500|AK120840
(135 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0971500 Similar to Cytochrome b5 279 4e-76
Os05g0108800 Cytochrome b5 256 3e-69
Os10g0518200 Similar to Cytochome b5 (Fragment) 172 4e-44
Os02g0649800 Similar to Cytochrome B5 homolog (Fragment) 131 1e-31
Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fra... 119 8e-28
D10954 82 9e-17
Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.... 77 4e-15
Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) 77 4e-15
Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7... 72 1e-13
Os08g0386300 Cytochrome b5 domain containing protein 67 3e-12
Os09g0338500 Similar to Desaturase/cytochrome b5 protein 67 5e-12
>Os01g0971500 Similar to Cytochrome b5
Length = 135
Score = 279 bits (713), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MSNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFED 60
MSNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFED
Sbjct: 1 MSNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFED 60
Query: 61 VGHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAIL 120
VGHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAIL
Sbjct: 61 VGHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAIL 120
Query: 121 GLAVAVRIYTKSESA 135
GLAVAVRIYTKSESA
Sbjct: 121 GLAVAVRIYTKSESA 135
>Os05g0108800 Cytochrome b5
Length = 137
Score = 256 bits (655), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 120/133 (90%), Positives = 126/133 (94%)
Query: 3 NNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVG 62
N KV TLEEV+KHN+KDDCWLIIGGKVYNV+KFLEDHPGGDDVLLSST KDATDDFEDVG
Sbjct: 5 NKKVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64
Query: 63 HSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAILGL 122
HSTTARAMMDEYYVGDID +TIP + KY PPKQPHYNQDKTPEFIIKILQFLVPLAILGL
Sbjct: 65 HSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQFLVPLAILGL 124
Query: 123 AVAVRIYTKSESA 135
AVA+RIYTKSESA
Sbjct: 125 AVAIRIYTKSESA 137
>Os10g0518200 Similar to Cytochome b5 (Fragment)
Length = 134
Score = 172 bits (437), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 79/132 (59%), Positives = 100/132 (75%)
Query: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDV 61
KV EEV+ HN DCWLII GKVY+VT F+++HPGGD+VLL+ T KDAT+DFED+
Sbjct: 3 GEKKVFGFEEVAGHNVTKDCWLIIAGKVYDVTSFMDEHPGGDEVLLAVTGKDATNDFEDI 62
Query: 62 GHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFIIKILQFLVPLAILG 121
GHS +AR MM++Y +G+IDA+TIP K + P+Q N DK + +IKILQFLVP+ ILG
Sbjct: 63 GHSESAREMMEKYLIGEIDASTIPVKRTHVTPQQAPGNPDKGDDMLIKILQFLVPILILG 122
Query: 122 LAVAVRIYTKSE 133
LA A+R YTKSE
Sbjct: 123 LAFAIRQYTKSE 134
>Os02g0649800 Similar to Cytochrome B5 homolog (Fragment)
Length = 138
Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 95/141 (67%), Gaps = 9/141 (6%)
Query: 1 MSNNK-VLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFE 59
M+ K V + +EVSKHN + DCWLII GKVY+V+ F+E+HPGGD+VLL+ T KDAT DF
Sbjct: 1 MAGGKAVYSFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFN 60
Query: 60 DVGHSTTARAMMDEYYVGDIDATTIPTKVKYTPPKQPHYNQDKTPEFI-----IKILQFL 114
D+GH+ TA+ +M +Y +G++DA+T+P K Y + + P+ + LQ
Sbjct: 61 DIGHTATAKELMPQYCIGEVDASTVPAKPAYRVVSE---DASAKPDAASQGAWLTALQLA 117
Query: 115 VPLAILGLAVAVRIYTKSESA 135
VP+ +LGLA A++ + K+++A
Sbjct: 118 VPVVLLGLAYALQDFAKTKTA 138
>Os12g0223300 Similar to Outer membrane cytochrome b(5) (Fragment)
Length = 150
Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 83/136 (61%), Gaps = 8/136 (5%)
Query: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAK-DATDDFED 60
S K+ + +V H ++ DCW++I GKVY+VTKFLEDHPGG+DVLL ++A DAT+ FED
Sbjct: 8 SAKKLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFED 67
Query: 61 VGHSTTARAMMDEYYVGDIDATTIPTKVKYT-------PPKQPHYNQDKTPEFIIKILQF 113
VGHST+A +MM+ Y +G I P+ + T PP Q K P L F
Sbjct: 68 VGHSTSAISMMNNYLIGSIKDYVPPSASEATTIGGNDVPPNFRRMPQKKGPPAPNTFLDF 127
Query: 114 LVPLAILGLAVAVRIY 129
L+PL +LGLA A Y
Sbjct: 128 LLPLFVLGLAFAAWYY 143
>D10954
Length = 65
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 44/60 (73%)
Query: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDV 61
KV EEV+ HN DCWLII GKVY+ T F+++HPGGD+VLL+ T KDAT+DF D+
Sbjct: 3 GEKKVFGFEEVAGHNVXRDCWLIIAGKVYDXTSFMDEHPGGDEVLLAVTGKDATNDFXDI 62
>Os08g0468700 Similar to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDV 61
++ K T+ EV KH+++D W+++ G VY+ T FL+DHPGG D +L + D T++F+ +
Sbjct: 539 TDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI 598
Query: 62 GHSTTARAMMDEYYVGDIDAT 82
HS A+A++D Y +G++ T
Sbjct: 599 -HSDKAKALLDTYRIGELITT 618
>Os08g0468100 Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1)
Length = 916
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 2 SNNKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDV 61
++ K T+ EV KH+++D W+++ G VY+ T FL+DHPGG D +L + D T++F+ +
Sbjct: 539 TDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI 598
Query: 62 GHSTTARAMMDEYYVGDIDAT 82
HS A+A++D Y +G++ T
Sbjct: 599 -HSDKAKALLDTYRIGELITT 618
>Os02g0770800 Similar to Nitrate reductase [NAD(P)H] (EC 1.7.1.2)
Length = 889
Score = 71.6 bits (174), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 8 TLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHSTTA 67
T+ EV +H T + W+I+ G VY+ T FL+DHPGG D ++ + D T++F+ + HS A
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSDKA 575
Query: 68 RAMMDEYYVGDIDATTIPTKVKYTP 92
R +++ Y +G++ I T Y+P
Sbjct: 576 RGLLEMYRIGEL----IVTGSDYSP 596
>Os08g0386300 Cytochrome b5 domain containing protein
Length = 119
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 5 KVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHS 64
+ T EE+S HNT+ DCW+II KVY+VT ++E+HPGG D +L++ D+T+ F H
Sbjct: 43 RSYTKEEISAHNTRTDCWVIIKDKVYDVTSYVEEHPGG-DAILNNAGGDSTEGFFGPQHG 101
Query: 65 TTARAMMDEYYVGDI 79
+++++ +G++
Sbjct: 102 FRVFEIIEDFCIGEL 116
>Os09g0338500 Similar to Desaturase/cytochrome b5 protein
Length = 466
Score = 66.6 bits (161), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 5 KVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHS 64
++++ EE+ H ++DD W+ I G VY+VT ++ HPGGD LL+ +DATD F H
Sbjct: 26 RMISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFAAY-HP 84
Query: 65 TTARAMMDEYYVGDIDATTI 84
+AR ++ + VG ++ T+
Sbjct: 85 PSARPLLGRFLVGRLEDYTV 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,856,950
Number of extensions: 202276
Number of successful extensions: 502
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 12
Length of query: 135
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 45
Effective length of database: 12,336,541
Effective search space: 555144345
Effective search space used: 555144345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)