BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0908700 Os01g0908700|AK120427
(446 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0908700 Similar to Hnrpa2b1-prov protein 788 0.0
Os12g0288400 Similar to Ubiquitin ligase protein mib (EC 6.... 572 e-163
Os06g0608800 von Willebrand factor, type A domain containin... 512 e-145
Os08g0494300 von Willebrand factor, type A domain containin... 506 e-143
Os08g0135400 von Willebrand factor, type A domain containin... 455 e-128
Os01g0960500 Copine domain containing protein 435 e-122
Os09g0565300 Copine domain containing protein 134 1e-31
Os05g0373300 Similar to BONZAI1 101 1e-21
Os02g0521300 C2 domain containing protein 92 7e-19
>Os01g0908700 Similar to Hnrpa2b1-prov protein
Length = 446
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/446 (87%), Positives = 390/446 (87%)
Query: 1 MGGGQSRSPRDGSGHGRYGHSPSFQQQWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MGGGQSRSPRDGSGHGRYGHSPSFQQQW
Sbjct: 1 MGGGQSRSPRDGSGHGRYGHSPSFQQQWGGGGGGGGGGGGGYPYGQDAHGGGYYGAPARA 60
Query: 61 XXXSKPRLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGR 120
SKPRLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGR
Sbjct: 61 GGASKPRLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGR 120
Query: 121 SLHHISNAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGF 180
SLHHISNAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGF
Sbjct: 121 SLHHISNAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGF 180
Query: 181 SEALSRYRELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASG 240
SEALSRYRELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASG
Sbjct: 181 SEALSRYRELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASG 240
Query: 241 QLSSQEQKTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIM 300
QLSSQEQKTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIM
Sbjct: 241 QLSSQEQKTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIM 300
Query: 301 NKNMPQSRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPPPGGSHDAYSYG 360
NKNMPQSRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPPPGGSHDAYSYG
Sbjct: 301 NKNMPQSRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPPPGGSHDAYSYG 360
Query: 361 SKSFXXXXXXXXXXXXXXXXXXXXXAQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQ 420
SKSF AQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQ
Sbjct: 361 SKSFSKPSTYPQSSTSSSSYPHYETAQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQ 420
Query: 421 TCCDCGQSLESCPICRSPISTRIKLY 446
TCCDCGQSLESCPICRSPISTRIKLY
Sbjct: 421 TCCDCGQSLESCPICRSPISTRIKLY 446
>Os12g0288400 Similar to Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb
protein)
Length = 546
Score = 572 bits (1474), Expect = e-163, Method: Compositional matrix adjust.
Identities = 269/384 (70%), Positives = 314/384 (81%), Gaps = 2/384 (0%)
Query: 65 KPRLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGRSLHH 124
+P+L+R+YS+I D Y S+D+V +ALAQAGLESSNLI+GIDFTKSNEW GK SF+G SLHH
Sbjct: 163 RPKLERKYSKIVDQYRSLDEVIEALAQAGLESSNLIIGIDFTKSNEWTGKRSFNGMSLHH 222
Query: 125 ISNAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGFSEAL 184
I ++PNPYEQAI+IIGQTLS FDEDNLIPC+GFGDA+THDQDVF FYPD RPCNGF EAL
Sbjct: 223 IGDSPNPYEQAITIIGQTLSAFDEDNLIPCYGFGDASTHDQDVFAFYPDERPCNGFQEAL 282
Query: 185 SRYRELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASGQLSS 244
+RYRE+VPHLRL+GPTSF+PIIEMA TIVEQSGGQYHVL+IIADGQVTRSVDT GQLS+
Sbjct: 283 ARYREIVPHLRLSGPTSFSPIIEMATTIVEQSGGQYHVLVIIADGQVTRSVDTEFGQLST 342
Query: 245 QEQKTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIMNKNM 304
QEQ TVDAIV+ASE PLSI+LVGVGDGPWDMMKEFDDNIP+R+FDNFQFVNF+ IM+K +
Sbjct: 343 QEQMTVDAIVQASEFPLSIILVGVGDGPWDMMKEFDDNIPARSFDNFQFVNFTSIMSKKI 402
Query: 305 PQSRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPPPGGSHDAYSYG--SK 362
QS+KE FALSALMEIP QYKAT+ELGILGRR KSPERVPLPPP S++ S S+
Sbjct: 403 SQSKKETEFALSALMEIPLQYKATLELGILGRRFAKSPERVPLPPPFASYNTISRAAPSR 462
Query: 363 SFXXXXXXXXXXXXXXXXXXXXXAQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQTC 422
+ + +S P+V + + Q+CP+CL P+DMAFGCGHQTC
Sbjct: 463 ANSFRSMPSHPRDEAPVDSAITASVTSPPSVDARAAEPQLCPVCLSKPRDMAFGCGHQTC 522
Query: 423 CDCGQSLESCPICRSPISTRIKLY 446
+CG +E CPICR PI TR+KLY
Sbjct: 523 AECGPQVEHCPICRRPIDTRVKLY 546
>Os06g0608800 von Willebrand factor, type A domain containing protein
Length = 447
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 253/392 (64%), Positives = 295/392 (75%), Gaps = 15/392 (3%)
Query: 67 RLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGRSLHHIS 126
RL R+YSRI DDY S++QVT+ALAQAGLESSNLIVGIDFTKSNEW GK SF+ R LH I
Sbjct: 59 RLQRKYSRIGDDYRSLNQVTEALAQAGLESSNLIVGIDFTKSNEWTGKLSFNRRCLHDIG 118
Query: 127 NAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGFSEALSR 186
N PNPYEQAISIIG+TLS FDEDNLIPCFGFGDA+THDQ+VF FYP+ RPCNGF EAL R
Sbjct: 119 NTPNPYEQAISIIGRTLSAFDEDNLIPCFGFGDASTHDQEVFSFYPENRPCNGFEEALER 178
Query: 187 YRELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASGQLSSQE 246
YRE+VP LRLAGPTSFAP+IE A+ IV+ +GGQYHVLLIIADGQVTRSVDT SGQLS QE
Sbjct: 179 YREIVPTLRLAGPTSFAPMIETAIGIVDSTGGQYHVLLIIADGQVTRSVDTQSGQLSPQE 238
Query: 247 QKTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIMNKNMPQ 306
+ T+DAIV+AS+ PLSIVLVGVGDGPWDMM +FDDNIP+R+FDNFQFVNF++IM+K++
Sbjct: 239 RDTIDAIVKASQFPLSIVLVGVGDGPWDMMHQFDDNIPARSFDNFQFVNFTDIMSKSIAA 298
Query: 307 SRKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPPPGGSHDAYSYG------ 360
RKEA FALSALMEIP QYKAT++L +LGRR P R+PLPPP +AYS
Sbjct: 299 DRKEAEFALSALMEIPTQYKATLDLQLLGRRQRIQP-RIPLPPP--MRNAYSRSTSFDQH 355
Query: 361 ------SKSFXXXXXXXXXXXXXXXXXXXXXAQSSSPAVPSSTYDNQVCPICLVNPKDMA 414
S SF + SS +C IC+ KD+A
Sbjct: 356 SGVYSRSSSFGPQTSGFQQSESFKQRQPVATTAPDTYTSESSLEGRLLCAICMDKSKDLA 415
Query: 415 FGCGHQTCCDCGQSLESCPICRSPISTRIKLY 446
FGCGHQTC +CG++L CP+C+ I+TRI+LY
Sbjct: 416 FGCGHQTCYECGKNLVRCPMCQQHITTRIRLY 447
>Os08g0494300 von Willebrand factor, type A domain containing protein
Length = 396
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/384 (64%), Positives = 298/384 (77%), Gaps = 14/384 (3%)
Query: 64 SKPRLDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGRSLH 123
+ P+ + R+++ DDYH+++QVTDALA AGLESSNLIVGIDFTKSNEW G+ SF+ +SLH
Sbjct: 26 AAPKGNNRFAKFGDDYHTLEQVTDALAHAGLESSNLIVGIDFTKSNEWTGRVSFNNQSLH 85
Query: 124 HISNAPNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGFSEA 183
+ + NPYEQAISIIGQTLS+FDEDNLIPC+GFGDATTHDQ VF FYPD +PC+GF +A
Sbjct: 86 SLGHISNPYEQAISIIGQTLSRFDEDNLIPCYGFGDATTHDQKVFSFYPDNKPCDGFEQA 145
Query: 184 LSRYRELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASGQLS 243
L RYRE+VP LRLAGPTSFAP+IE A+ IV+ SGGQYHVLLIIADGQVTRSVDT +GQLS
Sbjct: 146 LDRYREIVPQLRLAGPTSFAPMIETAIGIVDSSGGQYHVLLIIADGQVTRSVDTGNGQLS 205
Query: 244 SQEQKTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIMNKN 303
QE++T+DAIV+AS+ PLSIVLVGVGDGPWDMM++FDDNIPSRAFDNFQFVNF+EIM++
Sbjct: 206 PQERETIDAIVKASDYPLSIVLVGVGDGPWDMMRQFDDNIPSRAFDNFQFVNFTEIMSRP 265
Query: 304 MPQSRKEAAFALSALMEIPQQYKATVELGILG-RRSFKSPERVPLPPPGGSHDAYSYGSK 362
+P S+KEA FALSALMEIP+Q+KA + L +LG RR F P R LPPP Y YG
Sbjct: 266 VPASKKEAEFALSALMEIPEQFKAAINLQLLGKRRGF--PHRTVLPPPVRDFQQY-YGCS 322
Query: 363 SFXXXXXXXXXXXXXXXXXXXXXAQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQTC 422
+ ++S+P S D Q CPIC + K++AFGCGHQTC
Sbjct: 323 TV---------KETQSTSYGSLQKKTSAPKQDSDIGD-QTCPICWLEAKNLAFGCGHQTC 372
Query: 423 CDCGQSLESCPICRSPISTRIKLY 446
DCG+ L+ CPIC+ ISTRI+LY
Sbjct: 373 SDCGKDLKVCPICQREISTRIRLY 396
>Os08g0135400 von Willebrand factor, type A domain containing protein
Length = 401
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/379 (58%), Positives = 279/379 (73%), Gaps = 19/379 (5%)
Query: 68 LDRRYSRIADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGRSLHHISN 127
L ++YS I D+Y S+DQVT AL GLESSNLI+GIDFTKSNEW GK SF G+SLH I +
Sbjct: 40 LTKKYSYIPDNYQSLDQVTAALRDQGLESSNLILGIDFTKSNEWTGKRSFSGQSLHKIGS 99
Query: 128 APNPYEQAISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGFSEALSRY 187
PNPYEQAISIIG+TL+ FD+DNLIPCFGFGDATTHD +VF F+PD PC+GF E LS Y
Sbjct: 100 TPNPYEQAISIIGKTLAPFDDDNLIPCFGFGDATTHDYNVFSFHPDNSPCHGFEEVLSCY 159
Query: 188 RELVPHLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASGQLSSQEQ 247
+++VPHLRL+GPTSFAPI+E A+ IV++SGGQYHVL+I+ADGQVTRSVDT+ LS QE+
Sbjct: 160 KKIVPHLRLSGPTSFAPIVEAAVDIVDRSGGQYHVLVIVADGQVTRSVDTSDNDLSPQER 219
Query: 248 KTVDAIVRASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIMNKNMPQS 307
+TVD++V AS PLSIVLVGVGDGPW+ M++FDD IP+R FDNFQFVNF+ IM+++ Q
Sbjct: 220 RTVDSVVMASSYPLSIVLVGVGDGPWEDMQKFDDKIPARQFDNFQFVNFTSIMSRSTTQQ 279
Query: 308 RKEAAFALSALMEIPQQYKATVELGILGRRSFKSPERVPLPPPGGSHDAYSYGSKSFXXX 367
+KE+AFAL+ALME+P QYKAT+ELGILGR + K+ +
Sbjct: 280 QKESAFALAALMEVPIQYKATMELGILGRSTGKA-------------------KRIMPAP 320
Query: 368 XXXXXXXXXXXXXXXXXXAQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQTCCDCGQ 427
A +++ A P S ++QVCPICL N KD+AFGCGH C +CG+
Sbjct: 321 PPLPSAAGRQPSLRREDSAAATAAAAPPSPREDQVCPICLTNAKDLAFGCGHMCCRECGE 380
Query: 428 SLESCPICRSPISTRIKLY 446
SL CPICR I ++++LY
Sbjct: 381 SLTKCPICRQTIRSKLRLY 399
>Os01g0960500 Copine domain containing protein
Length = 387
Score = 435 bits (1118), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/374 (59%), Positives = 262/374 (70%), Gaps = 23/374 (6%)
Query: 75 IADDYHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGRSLHHISNAPNPYEQ 134
I D+Y SVD+VT AL AGLESSNLI+GIDFTKSNEW G++SF +SLH IS PNPYEQ
Sbjct: 34 IPDNYSSVDEVTAALRDAGLESSNLILGIDFTKSNEWSGRYSFGRKSLHAISATPNPYEQ 93
Query: 135 AISIIGQTLSKFDEDNLIPCFGFGDATTHDQDVFCFYPDLRPCNGFSEALSRYRELVPHL 194
AISIIG+TLS FD+DNLIPCFGFGDA+THDQ VF FY D R C GF E L RYR++VPHL
Sbjct: 94 AISIIGRTLSPFDDDNLIPCFGFGDASTHDQSVFSFYQDSRSCCGFEEVLERYRQIVPHL 153
Query: 195 RLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTASGQLSSQEQKTVDAIV 254
L+GPTSFAP+I A+++VE S QYHVL+IIADGQVT S +T G+LS QEQ T+ AIV
Sbjct: 154 NLSGPTSFAPLIYAAISVVENSNLQYHVLVIIADGQVTTS-NTKDGKLSPQEQATIQAIV 212
Query: 255 RASELPLSIVLVGVGDGPWDMMKEFDDNIPSRAFDNFQFVNFSEIMNKNMPQSRKEAAFA 314
AS PLSIV+VGVGDGPWD M+ FDD IP RAFDNFQFVNF+EIM+ + +KEAAFA
Sbjct: 213 DASYYPLSIVMVGVGDGPWDAMQHFDDCIPDRAFDNFQFVNFTEIMSTSKDMPKKEAAFA 272
Query: 315 LSALMEIPQQYKATVELGILGRRS--FKSPERVPLPPPGGSHDAYSYGSKSFXXXXXXXX 372
L+ALMEIP QYKAT L L + + S R+ LPPP
Sbjct: 273 LAALMEIPSQYKATQGLRPLEKHAGHVASHLRI-LPPPN-------------------KV 312
Query: 373 XXXXXXXXXXXXXAQSSSPAVPSSTYDNQVCPICLVNPKDMAFGCGHQTCCDCGQSLESC 432
A S S +T D QVCPICL NPKDMAF CGH TC +CG +L +C
Sbjct: 313 LENDNAAASRPPTASSQSTGFGKNTTDEQVCPICLTNPKDMAFQCGHLTCKECGPTLSTC 372
Query: 433 PICRSPISTRIKLY 446
P+CR PI+ R++LY
Sbjct: 373 PLCRVPITMRVRLY 386
>Os09g0565300 Copine domain containing protein
Length = 143
Score = 134 bits (337), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/83 (72%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 79 YHSVDQVTDALAQAGLESSNLIVGIDFTKSNEWLGKFSFHGRSLHHIS-NAPNPYEQAIS 137
Y ++DQV +AL + GLESSN+I+G+DFTKSNEW GK F+GRSLHHIS ++ NPYEQAIS
Sbjct: 39 YDTLDQVKEALEKVGLESSNIIIGVDFTKSNEWTGKHCFNGRSLHHISEDSLNPYEQAIS 98
Query: 138 IIGQTLSKFDEDNLIPCFGFGDA 160
IIG+TLS FDEDN IPCFGFGD+
Sbjct: 99 IIGKTLSTFDEDNRIPCFGFGDS 121
>Os05g0373300 Similar to BONZAI1
Length = 551
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 118/256 (46%), Gaps = 56/256 (21%)
Query: 98 NLIVGIDFTKSNEWLGKFSFHG-----RSLHHI--SNAPNPYEQAISIIGQTLSKFDEDN 150
N +V +DFT SN G +SLH+I S PN Y+QAI +G+ L +D D
Sbjct: 297 NFMVAVDFTASN---------GDPRSPQSLHYIDPSGRPNSYQQAILGVGEVLQFYDNDR 347
Query: 151 LIPCFGFGDATTHDQDVFCFYPDLRPCN----GFSEALSRYRELVPHLRLAGPTSFAPII 206
P +GFG T CF + + G +S Y + + LAGPT F PII
Sbjct: 348 RFPAWGFGAKTPQGYISHCFNLNATTNDCEVVGVEGIMSAYTSTLYSVTLAGPTLFGPII 407
Query: 207 EMAMTIVEQS----GGQYHVLLIIADGQVTRSVDTASGQLSSQEQKTVDAIVRASELPLS 262
A I S +Y VLLII DG +T Q+T D+IVRAS+LPLS
Sbjct: 408 NKAAEIASHSLQYGNNKYFVLLIITDGVLT------------DIQETKDSIVRASDLPLS 455
Query: 263 IVLVGVGDGPWDMMKEFD-DN----------IPSRAFDNFQFVNFSEIMNKNMPQSRKEA 311
I++VGVG+ + M+ D DN I +R D QFV ++ +
Sbjct: 456 ILIVGVGNADFKQMEILDGDNGKRLESSTGRIATR--DIVQFVPMRDVQGGQI------- 506
Query: 312 AFALSALMEIPQQYKA 327
+ S L E+P Q+ A
Sbjct: 507 SVVQSLLEELPGQFLA 522
>Os02g0521300 C2 domain containing protein
Length = 584
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 97/199 (48%), Gaps = 26/199 (13%)
Query: 98 NLIVGIDFTKSNEWLGKFSFHGRSLHHI--SNAPNPYEQAISIIGQTLSKFDEDNLIPCF 155
N +V +DFT SN G SLH+I + PN Y++AI +G L +D P +
Sbjct: 348 NFMVAVDFTASN---GNPRLPD-SLHYIDPTGRPNAYQRAILEVGDVLQYYDPAKRFPSW 403
Query: 156 GFGDATTHDQDVFCFYPD---LRP-CNGFSEALSRYRELVPHLRLAGPTSFAPIIEMAMT 211
GFG CF + +P G +S Y + ++ LAGPT F P++ A
Sbjct: 404 GFGARPIDGPVSHCFNLNGSTYQPEVEGIQGIMSAYISALRNVSLAGPTLFGPVVSTATA 463
Query: 212 IVEQSGG----QYHVLLIIADGQVTRSVDTASGQLSSQEQKTVDAIVRASELPLSIVLVG 267
I QS +Y VLLI+ DG VT Q+T+DAI++AS+ PLSI++VG
Sbjct: 464 IANQSLANNQQKYFVLLIVTDGVVT------------DFQETIDAIIKASDFPLSILVVG 511
Query: 268 VGDGPWDMMKEFDDNIPSR 286
VG + M+ D N R
Sbjct: 512 VGGADFKEMEFLDPNKGER 530
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,795,826
Number of extensions: 575435
Number of successful extensions: 1828
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1816
Number of HSP's successfully gapped: 11
Length of query: 446
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 342
Effective length of database: 11,605,545
Effective search space: 3969096390
Effective search space used: 3969096390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)