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Os12g0288400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin ligase protein mib (EC 6.3.2.-) (Mind bomb protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0203) R2 : 0.734
β1 : 0.826 (0.0743) R2dD : 0.0748 R2D : -0.0298
β2 : 1.46 (0.0519) R2dC : 0.465 R2C : 0.373
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.904 (0.0433) R2dN8 : 0.34 R2N8 : 0.196
σ : 0.382
deviance : 66.4
__
_____
C
peak time of C : 19.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.91 0.361 11.5 0.759 1.59 0.479 -0.418 0.291 0.985 19 81.43 9 -- --
59.16 0.358 11.5 0.771 1.58 0.492 -0.427 -- 0.994 19 82 6 -- --
59.3 0.359 11.5 0.764 1.58 0.471 -- 0.289 0.986 19 82 6 -- --
59.6 0.36 11.5 0.776 1.58 0.481 -- -- 0.992 19 82.38 6 -- --
180.13 0.629 11.5 0.781 -- 0.0479 -- 0.605 0.882 -- 70 10 -- --
66.33 0.382 11.5 0.822 1.46 -- -0.154 -- 0.904 19.8 -- -- -- --
66.4 0.382 11.5 0.826 1.46 -- -- -- 0.904 19.8 -- -- -- --
181.46 0.63 11.5 0.8 -- 0.078 -- -- 0.894 -- 80 8 -- --
75.09 0.404 11.5 -- 1.6 0.525 -- -- 0.924 19.1 84.92 8 -- --
181.82 0.63 11.5 0.808 -- -- -- -- 0.883 -- -- -- -- --
84.39 0.43 11.5 -- 1.45 -- -- -- 0.812 19.8 -- -- -- --
198.14 0.658 11.5 -- -- 0.126 -- -- 0.816 -- 82 5 -- --
199.05 0.659 11.5 -- -- -- -- -- 0.793 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 54.01 radiation 10.0 90 < th dose dependent sin 8 NA
2 54.04 radiation 1.0 90 > th dose independent sin 5 NA
6 54.50 atmosphere 1000.0 270 > th dose independent rect. 22 7
11 54.79 radiation 1.0 90 < th dose independent sin 6 NA
12 54.81 precipitation 0.1 270 < th dose independent rect. 17 16
13 54.81 precipitation 0.1 270 < th dose dependent rect. 17 16
22 55.01 atmosphere 995.0 270 > th dose independent rect. 11 17
23 55.04 atmosphere 995.0 270 > th dose independent rect. 9 8
25 55.07 atmosphere 1000.0 10 > th dose independent rect. 12 18
28 55.16 wind 1.0 270 > th dose independent rect. 9 8
30 55.18 wind 9.0 270 < th dose independent rect. 9 8
32 55.21 radiation 1.0 270 < th dose independent sin 10 NA
33 55.22 radiation 40.0 270 < th dose independent rect. 4 7
35 55.28 radiation 40.0 270 < th dose independent rect. 17 16
37 55.31 wind 9.0 270 < th dose independent rect. 17 16
38 55.32 precipitation 0.1 270 < th dose independent rect. 3 8
39 55.32 precipitation 0.1 270 < th dose dependent rect. 3 8
40 55.34 atmosphere 1000.0 10 > th dose independent rect. 24 6
41 55.35 precipitation 0.1 270 < th dose independent rect. 5 17
43 55.35 radiation 1.0 270 < th dose dependent rect. 22 16
44 55.35 precipitation 0.1 270 < th dose dependent rect. 5 17
45 55.36 temperature 10.0 270 > th dose independent rect. 9 8
46 55.36 atmosphere 1015.0 270 < th dose independent rect. 9 8
47 55.36 temperature 10.0 270 > th dose independent rect. 17 16
54 55.41 radiation 1.0 270 < th dose dependent rect. 22 10
58 55.45 precipitation 0.1 270 < th dose independent rect. 9 8
59 55.45 humidity 50.0 270 > th dose independent rect. 17 16
60 55.45 precipitation 0.1 270 < th dose dependent rect. 9 8
66 55.49 wind 9.0 270 < th dose independent rect. 11 17
70 55.55 temperature 10.0 270 > th dose independent rect. 4 7
71 55.55 atmosphere 995.0 270 > th dose independent rect. 4 7
72 55.55 atmosphere 1015.0 270 < th dose independent rect. 4 7
74 55.55 temperature 10.0 270 > th dose independent rect. 11 17
76 55.57 wind 9.0 270 < th dose independent rect. 4 7
90 55.68 wind 3.0 10 < th dose independent rect. 6 6
92 55.69 radiation 1.0 270 < th dose independent rect. 22 16
99 55.72 wind 9.0 270 < th dose dependent rect. 4 7
108 55.76 radiation 1.0 270 < th dose independent rect. 22 10
115 55.79 radiation 1.0 270 < th dose independent rect. 22 7
118 55.79 humidity 50.0 270 > th dose dependent rect. 22 7
127 55.81 radiation 1.0 270 > th dose independent sin 9 NA
128 55.81 wind 9.0 270 < th dose independent rect. 22 7
129 55.81 temperature 10.0 270 > th dose independent rect. 22 7
130 55.81 temperature 30.0 270 < th dose independent rect. 22 7
131 55.81 humidity 50.0 270 > th dose independent rect. 22 7
138 55.81 temperature 10.0 270 > th dose independent rect. 5 17
140 55.81 temperature 10.0 270 > th dose dependent rect. 22 7
144 55.82 humidity 50.0 270 > th dose independent rect. 4 7
152 55.85 wind 9.0 10 < th dose dependent rect. 6 6
168 55.96 wind 1.0 270 > th dose independent rect. 11 16
169 55.96 wind 9.0 270 < th dose independent rect. 5 17
180 56.03 atmosphere 995.0 270 > th dose independent rect. 17 16
192 56.07 radiation 1.0 90 > th dose independent rect. 4 9
210 56.09 humidity 70.0 10 > th dose dependent sin 8 NA
223 56.13 atmosphere 1015.0 270 < th dose independent rect. 22 7
227 56.14 wind 1.0 270 > th dose independent rect. 17 16
238 56.18 humidity 50.0 270 > th dose independent rect. 9 8
265 56.27 precipitation 0.1 270 < th dose independent rect. 22 7
267 56.27 precipitation 0.1 270 < th dose dependent rect. 22 7
296 56.32 radiation 1.0 270 > th dose independent rect. 9 8
317 56.36 humidity 80.0 10 > th dose dependent rect. 24 16
322 56.39 humidity 90.0 10 < th dose independent sin 3 NA
338 56.44 atmosphere 1000.0 270 > th dose dependent rect. 24 9
344 56.45 temperature 30.0 270 < th dose dependent rect. 5 6
346 56.46 atmosphere 1015.0 270 < th dose independent rect. 5 17
352 56.47 wind 9.0 270 < th dose dependent rect. 5 17
359 56.50 temperature 30.0 270 < th dose independent rect. 4 7
360 56.50 humidity 90.0 10 < th dose independent rect. 6 8
363 56.50 atmosphere 995.0 270 > th dose dependent rect. 4 6
427 56.59 radiation 1.0 10 > th dose independent rect. 6 6
435 56.60 temperature 10.0 270 > th dose dependent rect. 9 7
436 56.60 humidity 80.0 10 > th dose dependent rect. 24 14
465 56.68 temperature 30.0 10 < th dose independent rect. 6 6
469 56.68 humidity 90.0 10 < th dose independent rect. 2 9
471 56.68 temperature 30.0 270 < th dose independent rect. 18 15
501 56.70 precipitation 0.1 270 < th dose independent rect. 11 17
503 56.70 precipitation 0.1 270 < th dose dependent rect. 11 17
533 56.73 atmosphere 995.0 10 > th dose dependent rect. 6 6
544 56.75 radiation 1.0 10 > th dose independent rect. 6 8
546 56.76 humidity 90.0 10 < th dose independent rect. 6 6
554 56.76 humidity 50.0 10 > th dose dependent rect. 12 18
613 56.82 humidity 50.0 10 > th dose dependent rect. 24 6
660 56.90 humidity 90.0 10 < th dose independent rect. 19 16
662 56.90 radiation 40.0 10 < th dose dependent rect. 12 18
664 56.91 humidity 70.0 1440 > th dose independent rect. 1 6
674 56.93 atmosphere 1000.0 10 > th dose independent rect. 16 14
677 56.93 atmosphere 1015.0 270 < th dose independent rect. 17 16
717 56.98 atmosphere 1015.0 270 < th dose independent rect. 11 17
721 56.98 humidity 90.0 10 > th dose dependent rect. 24 10
741 57.00 precipitation 0.1 10 < th dose independent rect. 6 18
745 57.00 precipitation 0.1 10 < th dose dependent rect. 6 18
747 57.01 precipitation 0.1 10 < th dose independent rect. 6 6
751 57.01 humidity 50.0 270 > th dose independent rect. 11 17
753 57.01 precipitation 0.1 10 < th dose dependent rect. 6 6
771 57.03 wind 1.0 270 > th dose independent rect. 22 7
786 57.04 wind 9.0 10 < th dose independent rect. 6 6
789 57.04 humidity 90.0 10 < th dose independent rect. 21 14
790 57.04 wind 9.0 10 < th dose independent rect. 12 18
792 57.04 humidity 80.0 10 > th dose dependent rect. 24 8
802 57.05 wind 9.0 270 < th dose dependent rect. 22 7
806 57.05 temperature 10.0 30 > th dose dependent rect. 11 19
808 57.06 radiation 1.0 270 > th dose independent rect. 4 5
820 57.06 radiation 1.0 90 < th dose independent rect. 1 15
831 57.07 atmosphere 995.0 10 > th dose dependent rect. 24 6
845 57.08 wind 1.0 10 > th dose independent rect. 17 18
848 57.08 radiation 40.0 10 < th dose dependent rect. 24 6
852 57.08 atmosphere 995.0 30 > th dose dependent rect. 12 18
854 57.09 temperature 10.0 10 > th dose independent rect. 6 6
856 57.09 atmosphere 995.0 10 > th dose independent rect. 6 6
857 57.09 atmosphere 1015.0 10 < th dose independent rect. 6 6
862 57.09 temperature 10.0 10 > th dose independent rect. 12 18
869 57.10 wind 9.0 270 < th dose dependent rect. 23 5
875 57.11 humidity 90.0 10 > th dose independent rect. 24 14
892 57.12 atmosphere 1015.0 270 < th dose dependent rect. 15 8
911 57.13 wind 9.0 10 < th dose dependent rect. 6 18
914 57.14 wind 9.0 10 < th dose independent rect. 24 6
915 57.14 temperature 10.0 10 > th dose independent rect. 24 6
917 57.14 temperature 30.0 10 < th dose independent rect. 24 6
918 57.14 humidity 50.0 10 > th dose independent rect. 24 6
922 57.14 radiation 20.0 10 < th dose independent rect. 24 6
933 57.14 temperature 10.0 10 > th dose independent rect. 6 18
935 57.14 radiation 40.0 10 < th dose independent rect. 12 18
938 57.14 atmosphere 995.0 270 > th dose dependent rect. 23 5
948 57.15 radiation 30.0 1440 < th dose independent rect. 1 6
949 57.15 humidity 90.0 270 < th dose independent rect. 9 8
957 57.16 atmosphere 1015.0 10 < th dose independent rect. 24 6
967 57.17 radiation 40.0 270 < th dose independent rect. 5 17
969 57.17 wind 9.0 10 < th dose independent rect. 6 18
980 57.18 temperature 10.0 30 > th dose dependent rect. 11 8